Factsheet for PGSC0003DMT400065418

Subcellular Localization

min:

: max

Winner_takes_all: golgi, extracellular

Predictor Summary:

nucleus 3
mitochondrion 2
extracellular 3
plastid 1
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, golgi
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	extracellular
Plant-mPloc:	nucleus, plastid
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400036595	Potato	nucleus, plastid	31.94	69.32
PGSC0003DMT400005067	Potato	cytosol	23.95	66.79
Solyc04g009790.2.1	Tomato	extracellular, golgi, plasma membrane	90.84	55.3
KRH34623	Soybean	cytosol, extracellular, nucleus	49.35	53.1
PGSC0003DMT400055068	Potato	mitochondrion	51.31	51.24
GSMUA_Achr2P12860_001	Banana	mitochondrion	48.17	50.83
GSMUA_Achr5P02610_001	Banana	mitochondrion	46.86	50.56
GSMUA_Achr6P31090_001	Banana	mitochondrion	45.81	49.09
TraesCS5B01G026400.1	Wheat	mitochondrion	44.9	46.48
KXG37933	Sorghum	mitochondrion	46.47	46.1
Zm00001d033510_P001	Maize	mitochondrion	46.07	46.07
TraesCS5A01G371800.1	Wheat	mitochondrion	44.5	45.88
TraesCS5A01G027200.1	Wheat	mitochondrion	44.76	45.84
TraesCS5D01G035100.1	Wheat	mitochondrion	44.63	45.83
TraesCS5D01G381300.1	Wheat	mitochondrion	44.24	45.74
Zm00001d021933_P001	Maize	cytosol	21.6	45.58
Os03t0649000-01	Rice	mitochondrion	46.6	45.41
TraesCS5B01G373900.1	Wheat	mitochondrion	43.98	45.34
GSMUA_Achr8P04760_001	Banana	mitochondrion	45.94	45.17
CDX70194	Canola	extracellular, vacuole	42.28	44.99
Os12t0620600-01	Rice	mitochondrion	43.98	44.62
CDX98789	Canola	endoplasmic reticulum, extracellular	42.93	44.57
HORVU5Hr1G007680.4	Barley	mitochondrion	45.03	44.5
Bra009421.1-P	Field mustard	endoplasmic reticulum, extracellular	42.8	44.37
KXG24034	Sorghum	mitochondrion	45.03	44.05
HORVU5Hr1G092510.5	Barley	mitochondrion	43.98	43.64
AT2G10560.1	Thale cress	nucleus	15.84	43.53
Zm00001d041287_P001	Maize	mitochondrion	44.37	43.52
AT5G04860.1	Thale cress	endoplasmic reticulum, extracellular	43.72	42.71
GSMUA_Achr4P31330_001	Banana	mitochondrion	46.6	42.23
KRH07454	Soybean	endoplasmic reticulum	9.29	36.98
PGSC0003DMT400082714	Potato	nucleus	26.7	35.48
PGSC0003DMT400056835	Potato	cytosol, nucleus	18.59	34.13
Zm00001d032528_P001	Maize	plastid	18.98	32.22
GSMUA_Achr8P26590_001	Banana	mitochondrion	47.51	31.19

Protein Annotations

EnsemblPlants:PGSC0003DMT400065418	EnsemblPlantsGene:PGSC0003DMG400025434	EntrezGene:102592329	InterPro:IPR019448	InterPro:NT-C2	PANTHER:PTHR31182
PANTHER:PTHR31182:SF2	PFAM:PF10358	PFscan:PS51840	PGSC:PGSC0003DMG400025434	RefSeq:XP_006367024.1	SEG:seg
UniParc:UPI00029482B8	UniProt:M1CDX8	MapMan:35.2	:	:	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400025434]

Coordinates

chr4:+:5505367..5510188

Molecular Weight (calculated)

86172.9 Da

IEP (calculated)

4.801

GRAVY (calculated)

-0.534

Length

764 amino acids

Sequence
(BLAST)

001: MVVKLMKWMP WPPLLLSKKF EAKITVNCLK GFSFLSEKHV GVQDFDRLRV GIKWKGSTKG ISLNLSSFTR KSVKKNFTKE ECLKEDEGIV EWNEEFLSVC
101: NFSGYKDGVF HPWEVVFTVF NGTSKGPDQK VPVLAAATLN LADFASLAGE KEDGIEIFVP LEASIGKFKS CLSLCLSLNL VELRNTNEAS ENIPKFIMSA
201: PVSPNTGKVL LIDRNEGSSL KAGLQKVKFF KALSIRRHKK GYHEEEGSSD GRNSVRSEDP NYVYPVDTDS LDDDSEDGES EEGMEDTSVQ KSFSYETLVY
301: ANHAGGSFCS NTSSSDDDED LVHYSHHISD TRHKYPEDTT AALRNQSAEQ SSKRSILPWR KRKLSFRSPK TKGEPLLKKH YGEDGGDDID FDRRQLCSSD
401: ESSSGWYKSE EASPNRFSIS EFGDDSFAVG SWEQKEIISR DGQMKVQTQI FFASIDQRSE RAAGESACTA LVAVIADWFH CNPEDMPIKS QLDCLIREGS
501: LQWRDLCEKE TYMERFPDKH FDLETVLEAK VRPLSVVSEK SFIGFFHPEG IEEEEGFDFL DGAMSFDNIW DEICKSAQET PGHCDSFVYI VSWNDHFFIL
601: KVEKDAYYII DTLGERLFEG CNQAYILKFD KDTTIMRVPS ESQQSDDKPS SDRKEKSDVK EAADEGKIVV CTNGSDKMQE DMVPEIIYSG KEACKEYIKS
701: FLAAIPIREL QVDVKKGLMA STPLHQRLQI EFHYTKTSFD PKFESSSTQG LTANSLAILP SASE

Best Arabidopsis Sequence Match ( AT3G11760.1 )
(BLAST)

001: MVVKMMKWRP WPPLVTRKYE VKLSVKKLEG WDLVREGVPE KDRLTVEIRW KGPKATLGSL RRSVKRNFTK EAVGESDVVS WEDEEFQSLC SLTSYKDSLF
101: YPWEITFSVF TNGMKQGQKN KAPVVGTAFL NLAEYACVTD KKEFDINIPL TLSACVASET HPLLFVSLSL LELRTTPETS DSAAQTAVVP LPLPSPSPQQ
201: PTETHSVEKE DVSAIKAGLR KVKIFTEFVS TRKAKKACRE EEGRFSSFES SESLDDFETD FDEGKEELMS MRKSFSYGPL SYANGVGTSL NCGAKVSDED
301: EDWVYYSHRK SDVGAGCSDA EDSAAGLVYE ASLLPRRSIL PWRKRKLSFR SPKSKGEPLL KKDNGEEGGD DIDFDRRQLS SDEAHPPFGS KIDEDSSANP
401: RTSFSEFGED SFAIGSWEEK EVISRDGHMK LQTSVFLASI DQRSERAAGE SACTALVAVI ADWFQKNGNL MPIKSQFDSL IREGSLEWRN LCENETYMQK
501: FPDKHFDLDT VLQAKIRPLT VIPGKSFVGF FHPDGMINEG RFEFLQGAMS FDSIWAEIIS LEESSANGDS YDDDSPPHVY IVSWNDHFFV LKVEKEAYYI
601: IDTLGERLYE GCDQAYVLKF DHKTVIHKIL HTEEAGSESE PESEILSRGK ESCKEYIKNF LAAIPIRELQ EDIKKGLAST APVHHRLQIE FHYTTNAEIT
701: SL

Arabidopsis Description

F26K24.5 protein [Source:UniProtKB/TrEMBL;Acc:Q9SF22]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.