Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, extracellular
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 3
- extracellular 2
- endoplasmic reticulum 2
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT2G10560.1 | Thale cress | nucleus | 29.67 | 83.45 |
| CDX70194 | Canola | extracellular, vacuole | 71.61 | 77.99 |
| CDX98789 | Canola | endoplasmic reticulum, extracellular | 72.12 | 76.63 |
| Bra009421.1-P | Field mustard | endoplasmic reticulum, extracellular | 71.74 | 76.12 |
| PGSC0003DMT400005067 | Potato | cytosol | 19.69 | 56.2 |
| PGSC0003DMT400036595 | Potato | nucleus, plastid | 22.51 | 50.0 |
| GSMUA_Achr5P02610_001 | Banana | mitochondrion | 41.82 | 46.19 |
| GSMUA_Achr6P31090_001 | Banana | mitochondrion | 41.56 | 45.58 |
| KRH34623 | Soybean | cytosol, extracellular, nucleus | 40.79 | 44.93 |
| GSMUA_Achr2P12860_001 | Banana | mitochondrion | 41.18 | 44.48 |
| AT3G11760.1 | Thale cress | nucleus | 39.51 | 44.02 |
| Solyc11g006410.1.1 | Tomato | nucleus | 42.84 | 43.91 |
| PGSC0003DMT400065418 | Potato | extracellular, golgi | 42.71 | 43.72 |
| Os03t0649000-01 | Rice | mitochondrion | 42.71 | 42.6 |
| Zm00001d033510_P001 | Maize | mitochondrion | 41.56 | 42.54 |
| Os12t0620600-01 | Rice | mitochondrion | 40.92 | 42.5 |
| TraesCS5B01G026400.1 | Wheat | mitochondrion | 40.03 | 42.41 |
| TraesCS5A01G027200.1 | Wheat | mitochondrion | 40.15 | 42.09 |
| TraesCS5D01G035100.1 | Wheat | mitochondrion | 39.9 | 41.94 |
| TraesCS5B01G373900.1 | Wheat | mitochondrion | 39.64 | 41.84 |
| TraesCS5A01G371800.1 | Wheat | mitochondrion | 39.64 | 41.84 |
| TraesCS5D01G381300.1 | Wheat | mitochondrion | 39.51 | 41.81 |
| HORVU5Hr1G092510.5 | Barley | mitochondrion | 41.05 | 41.69 |
| KXG37933 | Sorghum | mitochondrion | 40.66 | 41.3 |
| HORVU5Hr1G007680.4 | Barley | mitochondrion | 40.15 | 40.62 |
| Zm00001d021933_P001 | Maize | cytosol | 18.29 | 39.5 |
| GSMUA_Achr4P31330_001 | Banana | mitochondrion | 42.33 | 39.26 |
| KXG24034 | Sorghum | mitochondrion | 39.0 | 39.05 |
| Zm00001d041287_P001 | Maize | mitochondrion | 38.49 | 38.64 |
| GSMUA_Achr8P04760_001 | Banana | mitochondrion | 37.08 | 37.32 |
| AT2G25460.2 | Thale cress | cytosol, mitochondrion, nucleus, plastid | 24.42 | 34.98 |
| KRH07454 | Soybean | endoplasmic reticulum | 7.29 | 29.69 |
| GSMUA_Achr8P26590_001 | Banana | mitochondrion | 40.92 | 27.49 |
| Zm00001d032528_P001 | Maize | plastid | 15.22 | 26.44 |
| PGSC0003DMT400056835 | Potato | cytosol, nucleus | 14.07 | 26.44 |
| Solyc04g009790.2.1 | Tomato | extracellular, golgi, plasma membrane | 41.82 | 26.06 |
Protein Annotations
| MapMan:35.2 | EntrezGene:830365 | ProteinID:AED90797.1 | ArrayExpress:AT5G04860 | EnsemblPlantsGene:AT5G04860 | RefSeq:AT5G04860 |
| TAIR:AT5G04860 | RefSeq:AT5G04860-TAIR-G | EnsemblPlants:AT5G04860.1 | TAIR:AT5G04860.1 | Unigene:At.43958 | ProteinID:BAB08990.1 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005739 | GO:GO:0008150 |
| InterPro:IPR019448 | RefSeq:NP_196106.1 | InterPro:NT-C2 | PFAM:PF10358 | PO:PO:0000293 | PO:PO:0001017 |
| PO:PO:0025195 | PO:PO:0025281 | PFscan:PS51840 | PANTHER:PTHR31182 | PANTHER:PTHR31182:SF3 | UniProt:Q9FMC4 |
| UniParc:UPI00000A5D2D | SEG:seg | : | : | : | : |
Description
Splicing factor 3A subunit [Source:UniProtKB/TrEMBL;Acc:Q9FMC4]
Coordinates
chr5:-:1411553..1414722
Molecular Weight (calculated)
88270.2 Da
IEP (calculated)
4.917
GRAVY (calculated)
-0.646
Length
782 amino acids
Sequence
(BLAST)
(BLAST)
001: MVVKMKQIMR WPPWPPLFAV KFDVIVVVHQ MDGLLDSDGG GDDSTDQSQR GGGTTTRKRP VVEIKWKGPK SVTLKRSVVR NLTEEGGFRG DGVVEWNEEF
101: KRVCEFSVYK EGSFLPWFVS LTVFSGLNQG SKEKVRSFGK ASLNIAEYFS LMKEDDVQVK VPLKDCDSSS VRSPHVHISL QFSPKESLPE RQRSALPVLW
201: SPLSAEAEKA ESVVKVGLRK MKTFNNCMSS TQASEKESEK DGSSGSGSDG KSPERNLDSD SSYPFDTDSL DEGDAADESE ENKENESSLA DPVNYKTLRS
301: ANWARGSFHT VTNPEDEDLI YYSHRSPLAE TGHCSDEVSN DVVSLEQAKG QMSKKRMLSW KKRKLSFRSP KQKGEPLLKK DCLEEGGDDI DFDRRQLSSS
401: DESNSDWYRS DDAIMKPLSQ FGDDDFVVGS WETKEIISRD GLMKLTARVF LASIDQRSER AAGESACTAL VAVMAHWLGS NRDIIPTRSE FDSLIREGSS
501: EWRNMCENEE YRERFPDKHF DLETVLQAKV RPICVVPERS FIGFFHPEKS EEEEGKEDAS LDFLKGVMSF DSIWEELMKQ EPEESASEPV IYIVSWNDHF
601: FVLLVNHDAY YIIDTLGERL YEGCNQAYVL KFDKDAEIKR LPSVIKDNKA DMGNQKQGGK NKSEQPERSK ESEEQEEEEV VCRGKESCRE YIKSFLAAIP
701: IQQVKADMKK GLVSSLHHRL QIELHYTKHL HHHQPNMFES SATEVTVSEA AVSVTVAWSL ASQFSNSGGF SCEMAELLGV KV
101: KRVCEFSVYK EGSFLPWFVS LTVFSGLNQG SKEKVRSFGK ASLNIAEYFS LMKEDDVQVK VPLKDCDSSS VRSPHVHISL QFSPKESLPE RQRSALPVLW
201: SPLSAEAEKA ESVVKVGLRK MKTFNNCMSS TQASEKESEK DGSSGSGSDG KSPERNLDSD SSYPFDTDSL DEGDAADESE ENKENESSLA DPVNYKTLRS
301: ANWARGSFHT VTNPEDEDLI YYSHRSPLAE TGHCSDEVSN DVVSLEQAKG QMSKKRMLSW KKRKLSFRSP KQKGEPLLKK DCLEEGGDDI DFDRRQLSSS
401: DESNSDWYRS DDAIMKPLSQ FGDDDFVVGS WETKEIISRD GLMKLTARVF LASIDQRSER AAGESACTAL VAVMAHWLGS NRDIIPTRSE FDSLIREGSS
501: EWRNMCENEE YRERFPDKHF DLETVLQAKV RPICVVPERS FIGFFHPEKS EEEEGKEDAS LDFLKGVMSF DSIWEELMKQ EPEESASEPV IYIVSWNDHF
601: FVLLVNHDAY YIIDTLGERL YEGCNQAYVL KFDKDAEIKR LPSVIKDNKA DMGNQKQGGK NKSEQPERSK ESEEQEEEEV VCRGKESCRE YIKSFLAAIP
701: IQQVKADMKK GLVSSLHHRL QIELHYTKHL HHHQPNMFES SATEVTVSEA AVSVTVAWSL ASQFSNSGGF SCEMAELLGV KV
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.