Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 2
- mitochondrion 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX76759 | Canola | golgi, mitochondrion, nucleus, plastid | 77.84 | 78.85 |
| Bra007798.1-P | Field mustard | golgi, mitochondrion, nucleus, plastid | 76.92 | 78.21 |
| CDY11529 | Canola | golgi, mitochondrion, nucleus, plastid | 76.74 | 78.17 |
| Solyc08g059710.2.1 | Tomato | nucleus | 34.43 | 33.69 |
| PGSC0003DMT400082714 | Potato | nucleus | 34.98 | 33.22 |
| VIT_04s0008g05510.t01 | Wine grape | nucleus | 35.9 | 32.89 |
| KRH52431 | Soybean | golgi, mitochondrion, nucleus, plastid | 34.43 | 30.23 |
| Os01t0194000-01 | Rice | cytosol | 26.56 | 30.02 |
| AT2G10560.1 | Thale cress | nucleus | 15.2 | 29.86 |
| KRH61765 | Soybean | mitochondrion | 32.97 | 28.89 |
| KRH15881 | Soybean | cytosol | 32.23 | 28.71 |
| EES00132 | Sorghum | mitochondrion | 27.66 | 28.6 |
| KRH05176 | Soybean | cytosol | 31.68 | 28.22 |
| TraesCS3B01G124200.1 | Wheat | mitochondrion | 29.49 | 27.2 |
| TraesCS3A01G105700.1 | Wheat | mitochondrion | 29.67 | 26.96 |
| GSMUA_Achr5P06470_001 | Banana | nucleus | 23.08 | 26.69 |
| TraesCS3D01G107900.2 | Wheat | mitochondrion | 30.59 | 26.3 |
| AT3G11760.1 | Thale cress | nucleus | 32.05 | 24.93 |
| AT5G04860.1 | Thale cress | endoplasmic reticulum, extracellular | 34.98 | 24.42 |
| HORVU3Hr1G019320.2 | Barley | cytosol, plastid | 26.92 | 23.63 |
| Zm00001d039472_P001 | Maize | mitochondrion | 20.33 | 23.47 |
| Zm00001d008799_P001 | Maize | mitochondrion, plastid | 19.23 | 22.88 |
Protein Annotations
| ArrayExpress:AT2G25460 | EnsemblPlants:AT2G25460.2 | EnsemblPlantsGene:AT2G25460 | EntrezGene:817084 | InterPro:IPR019448 | InterPro:NT-C2 |
| PANTHER:PTHR31182 | PANTHER:PTHR31182:SF2 | PFAM:PF10358 | PFscan:PS51840 | ProteinID:ANM63146.1 | RefSeq:AT2G25460 |
| RefSeq:AT2G25460-TAIR-G | RefSeq:NP_001325254.1 | SEG:seg | TAIR:AT2G25460 | Unigene:At.27352 | UniParc:UPI0008496E56 |
| UniProt:A0A1P8B2L4 | MapMan:35.2 | : | : | : | : |
Description
CONTAINS InterPro DOMAIN/s: C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G04860.1); Has 108 Blast hits to 69 proteins in 11 species: Archae - 0; Bacteria - 0; Meta /.../0; Fungi - 0; Plants - 108; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). [Source:TAIR;Acc:AT2G25460]
Coordinates
chr2:-:10832578..10835660
Molecular Weight (calculated)
60757.0 Da
IEP (calculated)
6.591
GRAVY (calculated)
-0.352
Length
546 amino acids
Sequence
(BLAST)
(BLAST)
001: MAKKVRKLHV TVKPVRLDGL PAILGDETAG KNLSAMVEVK WKGPVSGFGL GFVPFYRSNR PVNHTSSKPI ALGSNHVEWE EEFERVCCIV GPWNLSFNVF
101: YGENMDAKNK KSLIGKASLD LSELASKQES TVERKLPIRS KGSVLSKEAT LVVNVTFSEV RTEPDDFMQL GQISVDSAIP KKKSTSRRGG GSHFDSFSSP
201: ATASSSGGRS PVVETGLFSS PDENQSEPGQ KAGFNWWKRR RLSFSMTWRR EPREDEVTKT STKPSEELEK PATEIPIEAN KWVMKDLVSR DGKSKLKSEV
301: YLASIDQRSE QAAGEAACAA VAVVVAHWFH ANPKLINPSG TAFDSLITQG SSLWQSLCDK ESYLRLFPNR HFDLETIVSA NLRPVRVCTD KSFTGLFSPE
401: RFASLDGLMS FDQIWDEVEK EVALASSNGE TRVYIVSWND HFFVVKADLD GFCVIDSLGE RLFEGCKQAY ILKFDDSSLM YEKEESSEKL VCEGKKCCRE
501: YIKSFLAAIP VAELAAKEEK GNVVDVSLLH ERLQIDLHHI ILTSSD
101: YGENMDAKNK KSLIGKASLD LSELASKQES TVERKLPIRS KGSVLSKEAT LVVNVTFSEV RTEPDDFMQL GQISVDSAIP KKKSTSRRGG GSHFDSFSSP
201: ATASSSGGRS PVVETGLFSS PDENQSEPGQ KAGFNWWKRR RLSFSMTWRR EPREDEVTKT STKPSEELEK PATEIPIEAN KWVMKDLVSR DGKSKLKSEV
301: YLASIDQRSE QAAGEAACAA VAVVVAHWFH ANPKLINPSG TAFDSLITQG SSLWQSLCDK ESYLRLFPNR HFDLETIVSA NLRPVRVCTD KSFTGLFSPE
401: RFASLDGLMS FDQIWDEVEK EVALASSNGE TRVYIVSWND HFFVVKADLD GFCVIDSLGE RLFEGCKQAY ILKFDDSSLM YEKEESSEKL VCEGKKCCRE
501: YIKSFLAAIP VAELAAKEEK GNVVDVSLLH ERLQIDLHHI ILTSSD
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.