Factsheet for GSMUA_Achr5P06470_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os01t0194000-01	Rice	cytosol	31.99	31.26
EES00132	Sorghum	mitochondrion	33.9	30.3
Solyc08g059710.2.1	Tomato	nucleus	34.11	28.85
PGSC0003DMT400082714	Potato	nucleus	34.75	28.52
TraesCS3B01G124200.1	Wheat	mitochondrion	34.32	27.36
TraesCS3A01G105700.1	Wheat	mitochondrion	33.69	26.46
GSMUA_Achr8P17400_001	Banana	mitochondrion	24.15	25.85
TraesCS3D01G107900.2	Wheat	mitochondrion	33.9	25.2
VIT_04s0008g05510.t01	Wine grape	nucleus	31.78	25.17
CDX76759	Canola	golgi, mitochondrion, nucleus, plastid	27.33	23.93
CDY11529	Canola	golgi, mitochondrion, nucleus, plastid	26.91	23.69
HORVU3Hr1G019320.2	Barley	cytosol, plastid	31.14	23.63
Bra007798.1-P	Field mustard	golgi, mitochondrion, nucleus, plastid	26.69	23.46
AT2G25460.2	Thale cress	cytosol, mitochondrion, nucleus, plastid	26.69	23.08
KRH05176	Soybean	cytosol	29.66	22.84
GSMUA_Achr2P12860_001	Banana	mitochondrion	34.96	22.79
KRH61765	Soybean	mitochondrion	29.66	22.47
KRH52431	Soybean	golgi, mitochondrion, nucleus, plastid	29.24	22.19
GSMUA_Achr6P31090_001	Banana	mitochondrion	33.47	22.16
GSMUA_Achr5P02610_001	Banana	mitochondrion	33.05	22.03
KRH15881	Soybean	cytosol	28.6	22.02
Zm00001d008799_P001	Maize	mitochondrion, plastid	21.19	21.79
Zm00001d039472_P001	Maize	mitochondrion	21.4	21.35
GSMUA_Achr4P31330_001	Banana	mitochondrion	35.38	19.81
GSMUA_Achr8P04760_001	Banana	mitochondrion	32.42	19.69
GSMUA_Achr8P26590_001	Banana	mitochondrion	34.96	14.18

Protein Annotations

EnsemblPlants:GSMUA_Achr5P06470_001	EnsemblPlants:GSMUA_Achr5T06470_001	EnsemblPlantsGene:GSMUA_Achr5G06470_001	ncoils:Coil	PANTHER:PTHR31182	SEG:seg
UniParc:UPI000296A361	UniProt:M0SW76	MapMan:35.2	:	:	:

Description

Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr5G06470_001]

Coordinates

chr5:+:4736685..4741443

Molecular Weight (calculated)

53919.7 Da

IEP (calculated)

4.755

GRAVY (calculated)

-0.789

Length

472 amino acids

Sequence
(BLAST)

001: MGRKKQARSV SSRRPVVEDS WAVRWDYDDE ANRFENVCRL CDPESVADPV HDVSFSILYG CGDGGGKLNK LETIGTTMVN LAEWAKEYES KRKGERAEQK
101: EFKKQLCITL KKEGLTSHGM LHVTASFTEV RPFGVMEKAS PCEDKMMVER QGSQQMKSDD SGSFDTEDMV LDRLILLREE EDTSEVCNHH NHTASSSNSW
201: RSSPESESSS KSWFQWSKRR KVTNMVRDLE GETTKPSSFH EDNLSENGKQ KDSAESDEDD DPVGNWRNKE FISRDKQTKL KVQTFFASID QRDPSAGGES
301: ACTAIAAVIA SALHDNELNT PTRSEFDALI REGSSEWQKL CNNLTYIESF PDKHFDLETI LEAKIRPISL EVNAYYVMDT LGERLYEGCK KAYMLRFDDS
401: TEMSRWHENK AIEDREELIC RGKECCREFI NRFLAAIPLQ EELELEEKGI GINTALHQRL QIEFQLTEAS AD

Best Arabidopsis Sequence Match ( AT5G04860.2 )
(BLAST)

001: MKEDDVQVKV PLKDCDSSSV RSPHVHISLQ FSPKESLPER QRSALPVLWS PLSAEAEKAE SVVKVGLRKM KTFNNCMSST QASEKESEKD GSSGSGSDGK
101: SPERNLDSDS SYPFDTDSLD EGDAADESEE NKENESSLAD PVNYKTLRSA NWARGSFHTV TNPEDEDLIY YSHRSPLAET GHCSDEVSND VVSLEQAKGQ
201: MSKKRMLSWK KRKLSFRSPK QKGEPLLKKD CLEEGGDDID FDRRQLSSSD ESNSDWYRSD DAIMKPLSQF GDDDFVVGSW ETKEIISRDG LMKLTARVFL
301: ASIDQRSERA AGESACTALV AVMAHWLGSN RDIIPTRSEF DSLIREGSSE WRNMCENEEY RERFPDKHFD LETVLQAKVR PICVVPERSF IGFFHPEKSE
401: EEEGKEDASL DFLKGVMSFD SIWEELMKQE PEESASEPVI YIVSWNDHFF VLLVNHDAYY IIDTLGERLY EGCNQAYVLK FDKDAEIKRL PSVIKDNKAD
501: MGNQKQGGKN KSEQPERSKE SEEQEEEEVV CRGKESCREY IKSFLAAIPI QQVKADMKKG LVSSLHHRLQ IELHYTKHLH HHQPNMFESS ATEVTVSEAA
601: VSVTVAWSLA SQFSNSGGFS CEMAELLGVK V

Arabidopsis Description

Splicing factor 3A subunit [Source:UniProtKB/TrEMBL;Acc:Q9FMC4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.