CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, golgi, plastid, nucleus

Predictor Summary:

nucleus 2
mitochondrion 2
plastid 1
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY11529	Canola	golgi, mitochondrion, nucleus, plastid	93.88	94.4
Bra007798.1-P	Field mustard	golgi, mitochondrion, nucleus, plastid	85.9	86.22
AT2G25460.2	Thale cress	cytosol, mitochondrion, nucleus, plastid	78.85	77.84
Solyc08g059710.2.1	Tomato	nucleus	34.14	32.97
VIT_04s0008g05510.t01	Wine grape	nucleus	36.18	32.72
PGSC0003DMT400082714	Potato	nucleus	34.69	32.52
KRH52431	Soybean	golgi, mitochondrion, nucleus, plastid	34.51	29.9
Os01t0194000-01	Rice	cytosol	26.35	29.4
KRH15881	Soybean	cytosol	33.21	29.2
KRH05176	Soybean	cytosol	33.21	29.2
KRH61765	Soybean	mitochondrion	33.21	28.73
EES00132	Sorghum	mitochondrion	27.09	27.65
CDY71046	Canola	cytosol	29.5	27.41
GSMUA_Achr5P06470_001	Banana	nucleus	23.93	27.33
TraesCS3B01G124200.1	Wheat	mitochondrion	29.5	26.86
CDX70194	Canola	extracellular, vacuole	35.44	26.6
TraesCS3A01G105700.1	Wheat	mitochondrion	29.5	26.46
CDY47916	Canola	mitochondrion, nucleus	33.21	25.76
CDX98789	Canola	endoplasmic reticulum, extracellular	34.69	25.41
TraesCS3D01G107900.2	Wheat	mitochondrion	29.68	25.2
HORVU3Hr1G019320.2	Barley	cytosol, plastid	27.27	23.63
Zm00001d039472_P001	Maize	mitochondrion	20.59	23.47
Zm00001d008799_P001	Maize	mitochondrion, plastid	18.74	22.0

Protein Annotations

EnsemblPlants:CDX76759	EnsemblPlantsGene:GSBRNA2T00127251001	InterPro:IPR019448	InterPro:NT-C2	PANTHER:PTHR31182	PFAM:PF10358
PFscan:PS51840	ProteinID:CDX76759	ProteinID:CDX76759.1	SEG:seg	UniParc:UPI0004EDCE96	MapMan:35.2

Description

BnaC08g33450D

Coordinates

chrLK031808:+:893438..895670

Molecular Weight (calculated)

60038.1 Da

IEP (calculated)

5.872

GRAVY (calculated)

-0.332

Length

539 amino acids

Sequence
(BLAST)

001: MAKKVRKLHV SVKPVRLHGL PVVLGGETAA KNVFAMVELK WKGPVSGFGL GLVPFYRSNR PVNHTTSKPI ALGASHVEWE DEFERVCCIV GPWNLSFTVF
101: YGETIDAKNK KAIVGKASLD LAELATKLES AVERKLPIRS KGLLWKEATL VVNVTFSEVR NEPDDFTQLG PVTVDSAITT NMPSRRGGMD FDSSSSPATA
201: SNSGGVSPIL GTGSNSSPEN QSEPGHKAGF NWWKRRRLSF SMTWRREPRE EEESTTKTPS ATESEKPATE LSIEPNRWVA KDLASRDGKS KLRSEVYTAS
301: IDQRSEQAGG EAACAAVAVV VAHWFQANPR LINPSETEFD SLITQGSSLW QSLSDEESYL TLFPDRHFDL ETIVSAKLRP VRVCTDKSFT GFFSPERFAS
401: LEGLMSFDQI WDEVEKEVRA ASEIVESRFY IMSWNDHFFV VKGDIDGYCV IDSLGERLFE GCKQAYILKF DDSSLMYEKE ASSEKLVCKG KECCREYIKR
501: FLAAIPVAEL AAKEEKGNVD VSLLHEKLQI DLHHILTVD

Best Arabidopsis Sequence Match ( AT2G25460.2 )
(BLAST)

001: MAKKVRKLHV TVKPVRLDGL PAILGDETAG KNLSAMVEVK WKGPVSGFGL GFVPFYRSNR PVNHTSSKPI ALGSNHVEWE EEFERVCCIV GPWNLSFNVF
101: YGENMDAKNK KSLIGKASLD LSELASKQES TVERKLPIRS KGSVLSKEAT LVVNVTFSEV RTEPDDFMQL GQISVDSAIP KKKSTSRRGG GSHFDSFSSP
201: ATASSSGGRS PVVETGLFSS PDENQSEPGQ KAGFNWWKRR RLSFSMTWRR EPREDEVTKT STKPSEELEK PATEIPIEAN KWVMKDLVSR DGKSKLKSEV
301: YLASIDQRSE QAAGEAACAA VAVVVAHWFH ANPKLINPSG TAFDSLITQG SSLWQSLCDK ESYLRLFPNR HFDLETIVSA NLRPVRVCTD KSFTGLFSPE
401: RFASLDGLMS FDQIWDEVEK EVALASSNGE TRVYIVSWND HFFVVKADLD GFCVIDSLGE RLFEGCKQAY ILKFDDSSLM YEKEESSEKL VCEGKKCCRE
501: YIKSFLAAIP VAELAAKEEK GNVVDVSLLH ERLQIDLHHI ILTSSD

Arabidopsis Description

CONTAINS InterPro DOMAIN/s: C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G04860.1); Has 108 Blast hits to 69 proteins in 11 species: Archae - 0; Bacteria - 0; Meta /.../0; Fungi - 0; Plants - 108; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). [Source:TAIR;Acc:AT2G25460]
SUBAcon: [mitochondrion,plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.