Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, extracellular
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 3
- extracellular 2
- endoplasmic reticulum 2
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX70194 | Canola | extracellular, vacuole | 88.59 | 90.81 |
| AT5G04860.1 | Thale cress | endoplasmic reticulum, extracellular | 76.63 | 72.12 |
| AT2G10560.1 | Thale cress | nucleus | 25.14 | 66.55 |
| PGSC0003DMT400005067 | Potato | cytosol | 20.65 | 55.47 |
| PGSC0003DMT400036595 | Potato | nucleus, plastid | 22.55 | 47.16 |
| CDY71046 | Canola | cytosol | 36.96 | 46.9 |
| GSMUA_Achr6P31090_001 | Banana | mitochondrion | 44.43 | 45.86 |
| GSMUA_Achr5P02610_001 | Banana | mitochondrion | 43.89 | 45.62 |
| GSMUA_Achr2P12860_001 | Banana | mitochondrion | 44.29 | 45.03 |
| CDY47916 | Canola | mitochondrion, nucleus | 42.26 | 44.75 |
| KRH34623 | Soybean | cytosol, extracellular, nucleus | 42.93 | 44.51 |
| Solyc11g006410.1.1 | Tomato | nucleus | 45.24 | 43.64 |
| Os12t0620600-01 | Rice | mitochondrion | 44.16 | 43.16 |
| TraesCS5B01G026400.1 | Wheat | mitochondrion | 43.21 | 43.09 |
| PGSC0003DMT400065418 | Potato | extracellular, golgi | 44.57 | 42.93 |
| TraesCS5A01G027200.1 | Wheat | mitochondrion | 43.48 | 42.9 |
| TraesCS5D01G035100.1 | Wheat | mitochondrion | 43.07 | 42.61 |
| Os03t0649000-01 | Rice | mitochondrion | 45.38 | 42.6 |
| Zm00001d033510_P001 | Maize | mitochondrion | 44.02 | 42.41 |
| HORVU5Hr1G092510.5 | Barley | mitochondrion | 43.89 | 41.95 |
| TraesCS5A01G371800.1 | Wheat | mitochondrion | 41.98 | 41.7 |
| TraesCS5D01G381300.1 | Wheat | mitochondrion | 41.85 | 41.68 |
| KXG37933 | Sorghum | mitochondrion | 43.34 | 41.43 |
| HORVU5Hr1G007680.4 | Barley | mitochondrion | 43.48 | 41.4 |
| TraesCS5B01G373900.1 | Wheat | mitochondrion | 41.58 | 41.3 |
| GSMUA_Achr4P31330_001 | Banana | mitochondrion | 44.97 | 39.26 |
| Zm00001d021933_P001 | Maize | cytosol | 19.29 | 39.23 |
| KXG24034 | Sorghum | mitochondrion | 41.58 | 39.18 |
| Zm00001d041287_P001 | Maize | mitochondrion | 40.76 | 38.51 |
| GSMUA_Achr8P04760_001 | Banana | mitochondrion | 39.95 | 37.84 |
| CDY11529 | Canola | golgi, mitochondrion, nucleus, plastid | 25.54 | 35.07 |
| CDX76759 | Canola | golgi, mitochondrion, nucleus, plastid | 25.41 | 34.69 |
| GSMUA_Achr8P26590_001 | Banana | mitochondrion | 42.8 | 27.06 |
| Solyc04g009790.2.1 | Tomato | extracellular, golgi, plasma membrane | 44.57 | 26.14 |
| Zm00001d032528_P001 | Maize | plastid | 15.76 | 25.78 |
| KRH07454 | Soybean | endoplasmic reticulum | 6.66 | 25.52 |
| PGSC0003DMT400056835 | Potato | cytosol, nucleus | 14.27 | 25.24 |
Protein Annotations
| EnsemblPlants:CDX98789 | EnsemblPlantsGene:GSBRNA2T00106882001 | InterPro:IPR019448 | InterPro:NT-C2 | PANTHER:PTHR31182 | PANTHER:PTHR31182:SF3 |
| PFAM:PF10358 | PFscan:PS51840 | ProteinID:CDX98789 | ProteinID:CDX98789.1 | SEG:seg | UniParc:UPI0004EEC437 |
| MapMan:35.2 | : | : | : | : | : |
Description
BnaC09g50460D
Coordinates
chrLK031907:-:4906..8123
Molecular Weight (calculated)
83805.0 Da
IEP (calculated)
4.832
GRAVY (calculated)
-0.627
Length
736 amino acids
Sequence
(BLAST)
(BLAST)
001: MVVKMKQIMR WPPWPPLFAV KFDVIVAVHR IEGLSSDTGD CAARRRRPVV EIKWRGPRAV TLKRSSVERS YTEEGGFRGD GVVEWNEEFK RVCEFSVYKE
101: GEFLPWIVSF TVFNGLSQGT KEKVRSFGKA SLNIAEFFSL MKEDDVQVKV PLKMRGSSSS SSACLHISLQ FSSKESLPER QRSALPVLWS PLSGEAEKAE
201: SVVKVGLRKM KTFNHCMSIR QASEKEESIK KDASSGSETR SPERSLDSES SYPFDTDSQE EGDAADESEE SGVVEPVTYK TLRYANWARG SFHAGTNPED
301: DDLIYYSHRS PSAERGEEVS SDAVSSEQKK RMLSWKKRKL SFRSSKQKGE PLLKKDCLEE GGDDIDYDRR QLSSSDESTS DWYKSDDSVM KPLSEFGDDD
401: FVVGSWETRD ITSRDGLMKL KAQVFLASID QRSERAAGES ACTALVAVMA HWLGSNRDII PTRSEFDSLI REGSSEWRNL CEKEEYRERF PDKHFDLETV
501: LQAKIRPICV VPEKSFIGFF HPEKEEEEDA SLDFLRDVMS FDSIWEEIMK HEPEESGSEP VIYIVSWNDH FFVLLVDHDA YYIIDTLGER LYEGCNQAYV
601: LKFDKDAEIQ RLKPEVKDQN KNKSEQVERS TESDEQEEEV VCCRGKESCR EYIKSFLAAI PIQQAKADMK KGLVSSVHHR LQIELHFTRH LEQQQPNLLL
701: LESSASEANV DWSLASQYSN SGGFGCEVAE LVGVEV
101: GEFLPWIVSF TVFNGLSQGT KEKVRSFGKA SLNIAEFFSL MKEDDVQVKV PLKMRGSSSS SSACLHISLQ FSSKESLPER QRSALPVLWS PLSGEAEKAE
201: SVVKVGLRKM KTFNHCMSIR QASEKEESIK KDASSGSETR SPERSLDSES SYPFDTDSQE EGDAADESEE SGVVEPVTYK TLRYANWARG SFHAGTNPED
301: DDLIYYSHRS PSAERGEEVS SDAVSSEQKK RMLSWKKRKL SFRSSKQKGE PLLKKDCLEE GGDDIDYDRR QLSSSDESTS DWYKSDDSVM KPLSEFGDDD
401: FVVGSWETRD ITSRDGLMKL KAQVFLASID QRSERAAGES ACTALVAVMA HWLGSNRDII PTRSEFDSLI REGSSEWRNL CEKEEYRERF PDKHFDLETV
501: LQAKIRPICV VPEKSFIGFF HPEKEEEEDA SLDFLRDVMS FDSIWEEIMK HEPEESGSEP VIYIVSWNDH FFVLLVDHDA YYIIDTLGER LYEGCNQAYV
601: LKFDKDAEIQ RLKPEVKDQN KNKSEQVERS TESDEQEEEV VCCRGKESCR EYIKSFLAAI PIQQAKADMK KGLVSSVHHR LQIELHFTRH LEQQQPNLLL
701: LESSASEANV DWSLASQYSN SGGFGCEVAE LVGVEV
001: MVVKMKQIMR WPPWPPLFAV KFDVIVVVHQ MDGLLDSDGG GDDSTDQSQR GGGTTTRKRP VVEIKWKGPK SVTLKRSVVR NLTEEGGFRG DGVVEWNEEF
101: KRVCEFSVYK EGSFLPWFVS LTVFSGLNQG SKEKVRSFGK ASLNIAEYFS LMKEDDVQVK VPLKDCDSSS VRSPHVHISL QFSPKESLPE RQRSALPVLW
201: SPLSAEAEKA ESVVKVGLRK MKTFNNCMSS TQASEKESEK DGSSGSGSDG KSPERNLDSD SSYPFDTDSL DEGDAADESE ENKENESSLA DPVNYKTLRS
301: ANWARGSFHT VTNPEDEDLI YYSHRSPLAE TGHCSDEVSN DVVSLEQAKG QMSKKRMLSW KKRKLSFRSP KQKGEPLLKK DCLEEGGDDI DFDRRQLSSS
401: DESNSDWYRS DDAIMKPLSQ FGDDDFVVGS WETKEIISRD GLMKLTARVF LASIDQRSER AAGESACTAL VAVMAHWLGS NRDIIPTRSE FDSLIREGSS
501: EWRNMCENEE YRERFPDKHF DLETVLQAKV RPICVVPERS FIGFFHPEKS EEEEGKEDAS LDFLKGVMSF DSIWEELMKQ EPEESASEPV IYIVSWNDHF
601: FVLLVNHDAY YIIDTLGERL YEGCNQAYVL KFDKDAEIKR LPSVIKDNKA DMGNQKQGGK NKSEQPERSK ESEEQEEEEV VCRGKESCRE YIKSFLAAIP
701: IQQVKADMKK GLVSSLHHRL QIELHYTKHL HHHQPNMFES SATEVTVSEA AVSVTVAWSL ASQFSNSGGF SCEMAELLGV KV
101: KRVCEFSVYK EGSFLPWFVS LTVFSGLNQG SKEKVRSFGK ASLNIAEYFS LMKEDDVQVK VPLKDCDSSS VRSPHVHISL QFSPKESLPE RQRSALPVLW
201: SPLSAEAEKA ESVVKVGLRK MKTFNNCMSS TQASEKESEK DGSSGSGSDG KSPERNLDSD SSYPFDTDSL DEGDAADESE ENKENESSLA DPVNYKTLRS
301: ANWARGSFHT VTNPEDEDLI YYSHRSPLAE TGHCSDEVSN DVVSLEQAKG QMSKKRMLSW KKRKLSFRSP KQKGEPLLKK DCLEEGGDDI DFDRRQLSSS
401: DESNSDWYRS DDAIMKPLSQ FGDDDFVVGS WETKEIISRD GLMKLTARVF LASIDQRSER AAGESACTAL VAVMAHWLGS NRDIIPTRSE FDSLIREGSS
501: EWRNMCENEE YRERFPDKHF DLETVLQAKV RPICVVPERS FIGFFHPEKS EEEEGKEDAS LDFLKGVMSF DSIWEELMKQ EPEESASEPV IYIVSWNDHF
601: FVLLVNHDAY YIIDTLGERL YEGCNQAYVL KFDKDAEIKR LPSVIKDNKA DMGNQKQGGK NKSEQPERSK ESEEQEEEEV VCRGKESCRE YIKSFLAAIP
701: IQQVKADMKK GLVSSLHHRL QIELHYTKHL HHHQPNMFES SATEVTVSEA AVSVTVAWSL ASQFSNSGGF SCEMAELLGV KV
Arabidopsis Description
Splicing factor 3A subunit [Source:UniProtKB/TrEMBL;Acc:Q9FMC4]
SUBAcon: [endoplasmic reticulum,extracellular]
SUBAcon: [endoplasmic reticulum,extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.