Factsheet for PGSC0003DMT400036595

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 4
cytosol 1
plastid 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g006410.1.1	Tomato	nucleus	87.5	40.37
PGSC0003DMT400056835	Potato	cytosol, nucleus	47.44	40.14
Zm00001d021933_P001	Maize	cytosol	36.93	35.91
KRH07454	Soybean	endoplasmic reticulum	17.61	32.29
PGSC0003DMT400065418	Potato	extracellular, golgi	69.32	31.94
PGSC0003DMT400005067	Potato	cytosol	24.72	31.75
PGSC0003DMT400055068	Potato	mitochondrion	59.38	27.32
GSMUA_Achr5P02610_001	Banana	mitochondrion	53.69	26.69
GSMUA_Achr2P12860_001	Banana	mitochondrion	54.26	26.38
GSMUA_Achr6P31090_001	Banana	mitochondrion	53.41	26.37
KRH34623	Soybean	cytosol, extracellular, nucleus	53.12	26.34
KXG37933	Sorghum	mitochondrion	53.98	24.68
Os03t0649000-01	Rice	mitochondrion	53.98	24.23
Zm00001d033510_P001	Maize	mitochondrion	51.99	23.95
TraesCS5A01G371800.1	Wheat	mitochondrion	50.28	23.89
TraesCS5B01G026400.1	Wheat	mitochondrion	50.0	23.85
TraesCS5D01G381300.1	Wheat	mitochondrion	50.0	23.82
TraesCS5A01G027200.1	Wheat	mitochondrion	50.28	23.73
TraesCS5D01G035100.1	Wheat	mitochondrion	50.0	23.66
TraesCS5B01G373900.1	Wheat	mitochondrion	49.43	23.48
HORVU5Hr1G092510.5	Barley	mitochondrion	50.57	23.12
HORVU5Hr1G007680.4	Barley	mitochondrion	49.72	22.64
CDX98789	Canola	endoplasmic reticulum, extracellular	47.16	22.55
Bra009421.1-P	Field mustard	endoplasmic reticulum, extracellular	47.16	22.52
AT5G04860.1	Thale cress	endoplasmic reticulum, extracellular	50.0	22.51
Os12t0620600-01	Rice	mitochondrion	47.73	22.31
CDX70194	Canola	extracellular, vacuole	45.17	22.14
Zm00001d041287_P001	Maize	mitochondrion	48.3	21.82
GSMUA_Achr4P31330_001	Banana	mitochondrion	51.99	21.71
Zm00001d032528_P001	Maize	plastid	27.56	21.56
KXG24034	Sorghum	mitochondrion	47.73	21.51
GSMUA_Achr8P04760_001	Banana	mitochondrion	47.16	21.36
PGSC0003DMT400082714	Potato	nucleus	25.0	15.3
GSMUA_Achr8P26590_001	Banana	mitochondrion	50.0	15.12
AT2G10560.1	Thale cress	nucleus	6.53	8.27

Protein Annotations

EnsemblPlants:PGSC0003DMT400036595	EnsemblPlantsGene:PGSC0003DMG400014109	PANTHER:PTHR31182	PANTHER:PTHR31182:SF2	PGSC:PGSC0003DMG400014109	SEG:seg
UniParc:UPI0002957C4B	UniProt:M1B3W5	MapMan:35.2	:	:	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400014109]

Coordinates

chr11:-:6149309..6151639

Molecular Weight (calculated)

39496.8 Da

IEP (calculated)

6.136

GRAVY (calculated)

-0.823

Length

352 amino acids

Sequence
(BLAST)

001: MPKFVMSAPV SPSPAEVLST DRNELSALKA GLQKVKLFKG LSTMRRKKAC HEEEGSDGRN SVRSDDTDLV YPVDTDSLGD SEEGESDEVK EDTSMRKSFS
101: YETLAYAKHA GGSCYTNTSG SEDEDLIFYS HHKSVAGRVY AEGATGKGQQ RSKRKILPWR KRKLSFRSPK PKGEPLLKKH YGEEGGDDID FDRRQLSSSD
201: ESSSGWNKSE KGSTANGFPV SEFGEDSFAV GCWEQKEIVS RDGQMKLQTE VFFASIDQRN ERAAGESACT ALVAVIADWF HSNPEEMPLK SQLDNLIREG
301: SLEWRNLCEN KTYRECFPDK HFDLDTVVQA KVALSSPREI IHWFFSSGRN RR

Best Arabidopsis Sequence Match ( AT3G11760.1 )
(BLAST)

001: MVVKMMKWRP WPPLVTRKYE VKLSVKKLEG WDLVREGVPE KDRLTVEIRW KGPKATLGSL RRSVKRNFTK EAVGESDVVS WEDEEFQSLC SLTSYKDSLF
101: YPWEITFSVF TNGMKQGQKN KAPVVGTAFL NLAEYACVTD KKEFDINIPL TLSACVASET HPLLFVSLSL LELRTTPETS DSAAQTAVVP LPLPSPSPQQ
201: PTETHSVEKE DVSAIKAGLR KVKIFTEFVS TRKAKKACRE EEGRFSSFES SESLDDFETD FDEGKEELMS MRKSFSYGPL SYANGVGTSL NCGAKVSDED
301: EDWVYYSHRK SDVGAGCSDA EDSAAGLVYE ASLLPRRSIL PWRKRKLSFR SPKSKGEPLL KKDNGEEGGD DIDFDRRQLS SDEAHPPFGS KIDEDSSANP
401: RTSFSEFGED SFAIGSWEEK EVISRDGHMK LQTSVFLASI DQRSERAAGE SACTALVAVI ADWFQKNGNL MPIKSQFDSL IREGSLEWRN LCENETYMQK
501: FPDKHFDLDT VLQAKIRPLT VIPGKSFVGF FHPDGMINEG RFEFLQGAMS FDSIWAEIIS LEESSANGDS YDDDSPPHVY IVSWNDHFFV LKVEKEAYYI
601: IDTLGERLYE GCDQAYVLKF DHKTVIHKIL HTEEAGSESE PESEILSRGK ESCKEYIKNF LAAIPIRELQ EDIKKGLAST APVHHRLQIE FHYTTNAEIT
701: SL

Arabidopsis Description

F26K24.5 protein [Source:UniProtKB/TrEMBL;Acc:Q9SF22]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.