CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, nucleus, cytosol

Predictor Summary:

nucleus 3
mitochondrion 2
extracellular 1
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH07454	Soybean	endoplasmic reticulum	21.13	78.12
PGSC0003DMT400036595	Potato	nucleus, plastid	26.34	53.12
PGSC0003DMT400005067	Potato	cytosol	20.28	52.55
GSMUA_Achr5P02610_001	Banana	mitochondrion	50.0	50.14
PGSC0003DMT400065418	Potato	extracellular, golgi	53.1	49.35
GSMUA_Achr2P12860_001	Banana	mitochondrion	50.28	49.31
GSMUA_Achr6P31090_001	Banana	mitochondrion	49.44	49.23
Solyc11g006410.1.1	Tomato	nucleus	51.83	48.23
Zm00001d021933_P001	Maize	cytosol	24.23	47.51
KRG96284	Soybean	mitochondrion	50.28	47.28
KRH72142	Soybean	mitochondrion	51.13	47.2
KRH32877	Soybean	mitochondrion	50.85	46.94
TraesCS5B01G026400.1	Wheat	mitochondrion	48.31	46.48
TraesCS5A01G027200.1	Wheat	mitochondrion	48.59	46.25
KRH68026	Soybean	mitochondrion	40.14	46.19
TraesCS5D01G035100.1	Wheat	mitochondrion	48.31	46.1
Os03t0649000-01	Rice	mitochondrion	50.85	46.05
Os12t0620600-01	Rice	mitochondrion	48.17	45.42
KXG37933	Sorghum	mitochondrion	49.01	45.19
Zm00001d033510_P001	Maize	mitochondrion	48.59	45.16
TraesCS5A01G371800.1	Wheat	mitochondrion	46.76	44.8
TraesCS5B01G373900.1	Wheat	mitochondrion	46.76	44.8
TraesCS5D01G381300.1	Wheat	mitochondrion	46.62	44.79
HORVU5Hr1G092510.5	Barley	mitochondrion	47.32	43.64
HORVU5Hr1G007680.4	Barley	mitochondrion	47.46	43.6
CDX98789	Canola	endoplasmic reticulum, extracellular	44.51	42.93
KXG24034	Sorghum	mitochondrion	47.04	42.77
CDX70194	Canola	extracellular, vacuole	43.1	42.62
Bra009421.1-P	Field mustard	endoplasmic reticulum, extracellular	44.08	42.47
GSMUA_Achr4P31330_001	Banana	mitochondrion	50.42	42.47
Zm00001d041287_P001	Maize	mitochondrion	46.48	42.36
GSMUA_Achr8P04760_001	Banana	mitochondrion	45.77	41.83
AT5G04860.1	Thale cress	endoplasmic reticulum, extracellular	44.93	40.79
AT2G10560.1	Thale cress	nucleus	15.21	38.85
Zm00001d032528_P001	Maize	plastid	21.55	34.0
KRH15881	Soybean	cytosol	28.31	32.79
KRH05176	Soybean	cytosol	28.17	32.63
KRH61765	Soybean	mitochondrion	28.17	32.1
KRH52431	Soybean	golgi, mitochondrion, nucleus, plastid	27.46	31.35
Solyc04g009790.2.1	Tomato	extracellular, golgi, plasma membrane	53.1	30.04
GSMUA_Achr8P26590_001	Banana	mitochondrion	48.59	29.64
PGSC0003DMT400056835	Potato	cytosol, nucleus	15.92	27.16

Protein Annotations

EMBL:ACUP02006610	EnsemblPlants:KRH34623	EnsemblPlantsGene:GLYMA_10G194900	EntrezGene:100816062	InterPro:IPR019448	InterPro:NT-C2
PANTHER:PTHR31182	PANTHER:PTHR31182:SF2	PFAM:PF10358	PFscan:PS51840	ProteinID:KRH34623	ProteinID:KRH34623.1
SEG:seg	UniParc:UPI000233D7B0	UniProt:I1LCJ9	MapMan:35.2	:	:

Description

hypothetical protein

Coordinates

chr10:+:42694105..42699129

Molecular Weight (calculated)

80433.9 Da

IEP (calculated)

6.257

GRAVY (calculated)

-0.466

Length

710 amino acids

Sequence
(BLAST)

001: MVVKMMSWPP WPPLSSKKFE VVFIVRRLEG STSMEKAEEV KSKVVEIKWK GQKGVALSSL RRSIKRNFTR EEGLNDAGVV EWNQEFRNVC NFTRYKENVF
101: YPWEVMLTVS SISKQGPKTR ASVAGVTSIN LAEYVPAAVD KETEIVVPLN VPGTNDITNL SLFLSLSLLK LEALQEYLDA VQRSTMCVPS SPSSVDALAI
201: NKDEFTTLKA GLRRVKFFAD YVSTGRAKKA SSKDEGSDGR SSNRSEDFEN RYTSDVDSLD NDAAIKSEVN EEDSCVRHSL SYETLASGNY AGGSPYSGST
301: INGKDECWIY YSSQKSDYGG AHVENYNTCD QIEHQNSKHR ILSWRKRKLH FRSSKVKGEL LLKKHGEEGG DDIDYDRRLL SSSDDYTSGK WHKIENITTS
401: PSFVPEFEEN SFTVGSWEQK EVISRDGQMK LHTQIFFASI DQRSECAAGE SACAVLVALI ADWLKANQVV MPIKCEFDSL IRDGSSEWRT LCENKDFIKK
501: FPDKHFDLET VLQAKICAVS VVSEKSFVGF FIPEEPEGEG FDFLHGAMSF DSIWEEISHS ASELHMFREP LVYIVSWNDH FFVLKVEKDA YYIIDTLGER
601: LHEGCNQAYI LKFDTSTKVE KLSKKGNKTV EVNGSQENVV DKSFIITPNE SNDRREGIIC SGKESCKEYI KKFLAAIPIR ELQVDVKKGL KASMPLHHRL
701: QIEFHYTHLK

Best Arabidopsis Sequence Match ( AT5G04860.1 )
(BLAST)

001: MVVKMKQIMR WPPWPPLFAV KFDVIVVVHQ MDGLLDSDGG GDDSTDQSQR GGGTTTRKRP VVEIKWKGPK SVTLKRSVVR NLTEEGGFRG DGVVEWNEEF
101: KRVCEFSVYK EGSFLPWFVS LTVFSGLNQG SKEKVRSFGK ASLNIAEYFS LMKEDDVQVK VPLKDCDSSS VRSPHVHISL QFSPKESLPE RQRSALPVLW
201: SPLSAEAEKA ESVVKVGLRK MKTFNNCMSS TQASEKESEK DGSSGSGSDG KSPERNLDSD SSYPFDTDSL DEGDAADESE ENKENESSLA DPVNYKTLRS
301: ANWARGSFHT VTNPEDEDLI YYSHRSPLAE TGHCSDEVSN DVVSLEQAKG QMSKKRMLSW KKRKLSFRSP KQKGEPLLKK DCLEEGGDDI DFDRRQLSSS
401: DESNSDWYRS DDAIMKPLSQ FGDDDFVVGS WETKEIISRD GLMKLTARVF LASIDQRSER AAGESACTAL VAVMAHWLGS NRDIIPTRSE FDSLIREGSS
501: EWRNMCENEE YRERFPDKHF DLETVLQAKV RPICVVPERS FIGFFHPEKS EEEEGKEDAS LDFLKGVMSF DSIWEELMKQ EPEESASEPV IYIVSWNDHF
601: FVLLVNHDAY YIIDTLGERL YEGCNQAYVL KFDKDAEIKR LPSVIKDNKA DMGNQKQGGK NKSEQPERSK ESEEQEEEEV VCRGKESCRE YIKSFLAAIP
701: IQQVKADMKK GLVSSLHHRL QIELHYTKHL HHHQPNMFES SATEVTVSEA AVSVTVAWSL ASQFSNSGGF SCEMAELLGV KV

Arabidopsis Description

Splicing factor 3A subunit [Source:UniProtKB/TrEMBL;Acc:Q9FMC4]
SUBAcon: [endoplasmic reticulum,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.