Factsheet for TraesCS5B01G026400.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 6

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, plastid
iPSORT:	plastid
MultiLoc:	mitochondrion
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G027200.1	Wheat	mitochondrion	94.85	93.83
TraesCS5D01G035100.1	Wheat	mitochondrion	93.77	93.01
HORVU5Hr1G007680.4	Barley	mitochondrion	91.87	87.71
Os12t0620600-01	Rice	mitochondrion	77.24	75.7
KXG24034	Sorghum	mitochondrion	73.58	69.53
Zm00001d041287_P001	Maize	mitochondrion	72.76	68.93
TraesCS5B01G373900.1	Wheat	mitochondrion	68.29	68.02
PGSC0003DMT400005067	Potato	cytosol	22.09	59.49
GSMUA_Achr5P02610_001	Banana	mitochondrion	54.34	56.64
GSMUA_Achr6P31090_001	Banana	mitochondrion	53.52	55.4
GSMUA_Achr2P12860_001	Banana	mitochondrion	54.34	55.39
CDY71046	Canola	cytosol	41.87	53.28
VIT_08s0032g01040.t01	Wine grape	mitochondrion, nucleus	53.52	52.67
KRH72142	Soybean	mitochondrion	52.98	50.85
KRH32877	Soybean	mitochondrion	52.98	50.85
Bra038679.1-P	Field mustard	cytosol	47.29	50.14
CDY47916	Canola	mitochondrion, nucleus	47.15	50.07
KRG96284	Soybean	mitochondrion	51.22	50.07
PGSC0003DMT400036595	Potato	nucleus, plastid	23.85	50.0
AT3G11760.1	Thale cress	nucleus	47.02	49.43
Solyc01g006890.2.1	Tomato	mitochondrion	50.81	49.02
PGSC0003DMT400055068	Potato	mitochondrion	50.68	48.89
GSMUA_Achr4P31330_001	Banana	mitochondrion	55.42	48.52
KRH34623	Soybean	cytosol, extracellular, nucleus	46.48	48.31
KRH68026	Soybean	mitochondrion	40.24	48.14
Solyc11g006410.1.1	Tomato	nucleus	47.02	45.48
PGSC0003DMT400065418	Potato	extracellular, golgi	46.48	44.9
CDX70194	Canola	extracellular, vacuole	42.55	43.73
CDX98789	Canola	endoplasmic reticulum, extracellular	43.09	43.21
AT2G10560.1	Thale cress	nucleus	16.12	42.81
Bra009421.1-P	Field mustard	endoplasmic reticulum, extracellular	42.55	42.61
AT5G04860.1	Thale cress	endoplasmic reticulum, extracellular	42.41	40.03
TraesCS3B01G124200.1	Wheat	mitochondrion	28.59	35.64
KRH07454	Soybean	endoplasmic reticulum	9.08	34.9
Solyc04g009790.2.1	Tomato	extracellular, golgi, plasma membrane	46.34	27.25
PGSC0003DMT400056835	Potato	cytosol, nucleus	14.09	25.0

Protein Annotations

EnsemblPlants:TraesCS5B01G026400.1	EnsemblPlantsGene:TraesCS5B01G026400	InterPro:IPR019448	InterPro:NT-C2	PANTHER:PTHR31182	PANTHER:PTHR31182:SF6
PFAM:PF10358	PFscan:PS51840	SEG:seg	MapMan:35.2	:	:

Description

No Description!

Coordinates

chr5B:-:25267570..25271792

Molecular Weight (calculated)

81649.1 Da

IEP (calculated)

4.853

GRAVY (calculated)

-0.513

Length

738 amino acids

Sequence
(BLAST)

001: MRWPWPPAAR KFSVRLVVRR AEGLPPAPAT DADAEARMAV ELKWKGPKAR WKGLRVCRNR TRLEAPAPAA DAESSVAWDE EFEDVVTLTA ASHRKPAAAF
101: HPWDLSFSVL NDSNKGPKGE LILGTASLNL ADYASAVEEE IEIILPLSAP NGTPESSPSL HLTLSLVELR LPQQSPDAAQ RSVACVPLSP SSGDSVPSGK
201: DEHSVIKAGL RKVKIITDLV STRRSKKPKR EDDSSDKYVH SDGAEYPCVI DSDDDLDDRQ RDDDLGGSTV RKSFSYGSLQ SVNVAGGLFY AHARIDGEHE
301: DWIYYSHRKS DAGYHVEKEP SSTSEENSSV VIRRKRSILP WRKVKLPKKG EPLLKNKNGE EGGDDIDYDR RLLTSSGESV SGGSSGSVST MESVFGDDNF
401: VVGNWESKEV LSRDGHLKLS TQVFFASIDQ RSERAAGESA CTALVAVIAD WFQANQELMP IRSQFDSLIR EGSLEWRKLC ENETYRERFP DKHFDLETVL
501: HAKIRPLTVA PNKSFVGFFQ PESAEDGSGF DFLDGAMSFD NIWEISQAAE ASSTEKPTLY VVSWNDHFFV LKVEADAYYI IDTLGERLYE GCNQAYILKF
601: DDSTTIHKEP AEKKEGSPDS SAHHKDSAES SSTEQDSGTD DTEESELVLK GKEACKEYIK SFLAAIPIRE LQADIKKGLM ASTPLHHRLQ IEFHYTEACP
701: REITLPAPAP AVEAPFEFCW PDPPPAMEFP LAPAVAVV

Best Arabidopsis Sequence Match ( AT5G04860.1 )
(BLAST)

001: MVVKMKQIMR WPPWPPLFAV KFDVIVVVHQ MDGLLDSDGG GDDSTDQSQR GGGTTTRKRP VVEIKWKGPK SVTLKRSVVR NLTEEGGFRG DGVVEWNEEF
101: KRVCEFSVYK EGSFLPWFVS LTVFSGLNQG SKEKVRSFGK ASLNIAEYFS LMKEDDVQVK VPLKDCDSSS VRSPHVHISL QFSPKESLPE RQRSALPVLW
201: SPLSAEAEKA ESVVKVGLRK MKTFNNCMSS TQASEKESEK DGSSGSGSDG KSPERNLDSD SSYPFDTDSL DEGDAADESE ENKENESSLA DPVNYKTLRS
301: ANWARGSFHT VTNPEDEDLI YYSHRSPLAE TGHCSDEVSN DVVSLEQAKG QMSKKRMLSW KKRKLSFRSP KQKGEPLLKK DCLEEGGDDI DFDRRQLSSS
401: DESNSDWYRS DDAIMKPLSQ FGDDDFVVGS WETKEIISRD GLMKLTARVF LASIDQRSER AAGESACTAL VAVMAHWLGS NRDIIPTRSE FDSLIREGSS
501: EWRNMCENEE YRERFPDKHF DLETVLQAKV RPICVVPERS FIGFFHPEKS EEEEGKEDAS LDFLKGVMSF DSIWEELMKQ EPEESASEPV IYIVSWNDHF
601: FVLLVNHDAY YIIDTLGERL YEGCNQAYVL KFDKDAEIKR LPSVIKDNKA DMGNQKQGGK NKSEQPERSK ESEEQEEEEV VCRGKESCRE YIKSFLAAIP
701: IQQVKADMKK GLVSSLHHRL QIELHYTKHL HHHQPNMFES SATEVTVSEA AVSVTVAWSL ASQFSNSGGF SCEMAELLGV KV

Arabidopsis Description

Splicing factor 3A subunit [Source:UniProtKB/TrEMBL;Acc:Q9FMC4]
SUBAcon: [endoplasmic reticulum,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.