CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, vacuole

Predictor Summary:

nucleus 2
mitochondrion 3
extracellular 2
endoplasmic reticulum 1
vacuole 2
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, vacuole
Any Predictor:	mitochondrion, nucleus, secretory
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra009421.1-P	Field mustard	endoplasmic reticulum, extracellular	96.38	93.89
CDX98789	Canola	endoplasmic reticulum, extracellular	90.81	88.59
AT5G04860.1	Thale cress	endoplasmic reticulum, extracellular	77.99	71.61
AT2G10560.1	Thale cress	nucleus	24.51	63.31
PGSC0003DMT400005067	Potato	cytosol	20.47	53.65
CDY71046	Canola	cytosol	38.16	47.24
GSMUA_Achr5P02610_001	Banana	mitochondrion	45.54	46.19
GSMUA_Achr6P31090_001	Banana	mitochondrion	45.82	46.14
PGSC0003DMT400036595	Potato	nucleus, plastid	22.14	45.17
CDY47916	Canola	mitochondrion, nucleus	43.59	45.04
GSMUA_Achr2P12860_001	Banana	mitochondrion	45.4	45.03
KRH34623	Soybean	cytosol, extracellular, nucleus	42.62	43.1
TraesCS5B01G026400.1	Wheat	mitochondrion	43.73	42.55
Zm00001d033510_P001	Maize	mitochondrion	45.26	42.54
TraesCS5A01G027200.1	Wheat	mitochondrion	44.15	42.49
Os12t0620600-01	Rice	mitochondrion	44.43	42.36
PGSC0003DMT400065418	Potato	extracellular, golgi	44.99	42.28
TraesCS5D01G035100.1	Wheat	mitochondrion	43.73	42.2
Os03t0649000-01	Rice	mitochondrion	45.96	42.09
Solyc11g006410.1.1	Tomato	nucleus	44.71	42.07
TraesCS5A01G371800.1	Wheat	mitochondrion	42.9	41.57
KXG37933	Sorghum	mitochondrion	44.29	41.3
HORVU5Hr1G092510.5	Barley	mitochondrion	44.29	41.3
TraesCS5D01G381300.1	Wheat	mitochondrion	42.48	41.27
TraesCS5B01G373900.1	Wheat	mitochondrion	42.48	41.16
HORVU5Hr1G007680.4	Barley	mitochondrion	44.15	41.01
GSMUA_Achr4P31330_001	Banana	mitochondrion	46.38	39.5
KXG24034	Sorghum	mitochondrion	42.62	39.18
Zm00001d021933_P001	Maize	cytosol	19.64	38.95
Zm00001d041287_P001	Maize	mitochondrion	41.78	38.51
GSMUA_Achr8P04760_001	Banana	mitochondrion	40.67	37.58
CDY11529	Canola	golgi, mitochondrion, nucleus, plastid	26.6	35.63
CDX76759	Canola	golgi, mitochondrion, nucleus, plastid	26.6	35.44
Zm00001d032528_P001	Maize	plastid	16.85	26.89
GSMUA_Achr8P26590_001	Banana	mitochondrion	43.31	26.72
KRH07454	Soybean	endoplasmic reticulum	6.96	26.04
Solyc04g009790.2.1	Tomato	extracellular, golgi, plasma membrane	44.71	25.58
PGSC0003DMT400056835	Potato	cytosol, nucleus	13.79	23.8

Protein Annotations

EnsemblPlants:CDX70194	EnsemblPlantsGene:GSBRNA2T00136315001	InterPro:IPR019448	InterPro:NT-C2	PANTHER:PTHR31182	PANTHER:PTHR31182:SF3
PFAM:PF10358	PFscan:PS51840	ProteinID:CDX70194	ProteinID:CDX70194.1	SEG:seg	UniParc:UPI0004EF225F
MapMan:35.2	:	:	:	:	:

Description

BnaA10g25430D

Coordinates

chrLK031790:+:3490437..3493601

Molecular Weight (calculated)

81708.8 Da

IEP (calculated)

4.951

GRAVY (calculated)

-0.591

Length

718 amino acids

Sequence
(BLAST)

001: MVVKMKQIMR WPPWPPLFAV KFDVIVAVHR IEGLNPDNGD KRRRPVVEIK WRGPRAVTLK RSSVERNHTE EGGFRGDGVV EWNEEFKRVC EFSVYKEGEF
101: LPWIVSFTVF NGLSQGTKEK VRSFGKASLN IAEFFSLMKE DDVQVKVPLK MRGSSSSSSA CLHISLQFSS KESLPERQRS ALPVLWSPLS GEAEKAESVV
201: KVGLRKMKTF NHCMSIRQAS EKEETSKKDA SSGSETRSPE RSLDSESSYP FDTDSQDEGD AADESEESNA SGVVQPITYK TLRYANWARG SFHAGTNPED
301: DDLIYYSHRS PSAERGDEVL SDAVSSEQKK RMLSWKKRKL SFRSSKQKGE PLLKKDCLED GGDDIDYDRR QLSSSDESTS DWYKSDDSVM KPLSEFGDDD
401: FVVGSWETRD ITSRDGLMKL KALVFLASID QRSERAAGES ACTALVAVMA HWLGSNRDII PTRSEFDSLI REGSSEWRNL CEKEEYMERF PDKHFDLETV
501: LQAKIRPICV VPEKSFIGFF HPEKEEEEDA SLDFLRDVMS FDSIWEEIMR HEPEESGSEP VIYIVSWNDH FFVLLVDHDA YYIIDTLGER LYEGCNQAYV
601: LKFDKDAEIQ RLKPEQEEEE VVVCSRGKES CREYIKSFLA AIPIQQAKAD MKKGLVSSVH HRLQIELHFT RHLQQQQPNL LLLESSAREA NVAWSVASGY
701: SNSGGFGCEV TELMGVEV

Best Arabidopsis Sequence Match ( AT5G04860.1 )
(BLAST)

001: MVVKMKQIMR WPPWPPLFAV KFDVIVVVHQ MDGLLDSDGG GDDSTDQSQR GGGTTTRKRP VVEIKWKGPK SVTLKRSVVR NLTEEGGFRG DGVVEWNEEF
101: KRVCEFSVYK EGSFLPWFVS LTVFSGLNQG SKEKVRSFGK ASLNIAEYFS LMKEDDVQVK VPLKDCDSSS VRSPHVHISL QFSPKESLPE RQRSALPVLW
201: SPLSAEAEKA ESVVKVGLRK MKTFNNCMSS TQASEKESEK DGSSGSGSDG KSPERNLDSD SSYPFDTDSL DEGDAADESE ENKENESSLA DPVNYKTLRS
301: ANWARGSFHT VTNPEDEDLI YYSHRSPLAE TGHCSDEVSN DVVSLEQAKG QMSKKRMLSW KKRKLSFRSP KQKGEPLLKK DCLEEGGDDI DFDRRQLSSS
401: DESNSDWYRS DDAIMKPLSQ FGDDDFVVGS WETKEIISRD GLMKLTARVF LASIDQRSER AAGESACTAL VAVMAHWLGS NRDIIPTRSE FDSLIREGSS
501: EWRNMCENEE YRERFPDKHF DLETVLQAKV RPICVVPERS FIGFFHPEKS EEEEGKEDAS LDFLKGVMSF DSIWEELMKQ EPEESASEPV IYIVSWNDHF
601: FVLLVNHDAY YIIDTLGERL YEGCNQAYVL KFDKDAEIKR LPSVIKDNKA DMGNQKQGGK NKSEQPERSK ESEEQEEEEV VCRGKESCRE YIKSFLAAIP
701: IQQVKADMKK GLVSSLHHRL QIELHYTKHL HHHQPNMFES SATEVTVSEA AVSVTVAWSL ASQFSNSGGF SCEMAELLGV KV

Arabidopsis Description

Splicing factor 3A subunit [Source:UniProtKB/TrEMBL;Acc:Q9FMC4]
SUBAcon: [endoplasmic reticulum,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.