Factsheet for PGSC0003DMT400056835

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

nucleus 3
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400036595	Potato	nucleus, plastid	40.14	47.44
Solyc11g006410.1.1	Tomato	nucleus	39.9	21.76
KRH07454	Soybean	endoplasmic reticulum	8.65	18.75
PGSC0003DMT400065418	Potato	extracellular, golgi	34.13	18.59
Zm00001d021933_P001	Maize	cytosol	14.66	16.85
PGSC0003DMT400055068	Potato	mitochondrion	30.05	16.34
KRH34623	Soybean	cytosol, extracellular, nucleus	27.16	15.92
GSMUA_Achr6P31090_001	Banana	mitochondrion	27.16	15.85
GSMUA_Achr2P12860_001	Banana	mitochondrion	27.4	15.75
GSMUA_Achr5P02610_001	Banana	mitochondrion	26.2	15.4
Os03t0649000-01	Rice	mitochondrion	27.64	14.67
Zm00001d032528_P001	Maize	plastid	15.87	14.67
KXG37933	Sorghum	mitochondrion	26.92	14.55
Zm00001d033510_P001	Maize	mitochondrion	26.2	14.27
CDX98789	Canola	endoplasmic reticulum, extracellular	25.24	14.27
Bra009421.1-P	Field mustard	endoplasmic reticulum, extracellular	25.0	14.11
TraesCS5B01G026400.1	Wheat	mitochondrion	25.0	14.09
AT5G04860.1	Thale cress	endoplasmic reticulum, extracellular	26.44	14.07
HORVU5Hr1G092510.5	Barley	mitochondrion	25.96	14.03
TraesCS5D01G035100.1	Wheat	mitochondrion	25.0	13.98
TraesCS5A01G027200.1	Wheat	mitochondrion	25.0	13.94
CDX70194	Canola	extracellular, vacuole	23.8	13.79
TraesCS5A01G371800.1	Wheat	mitochondrion	24.52	13.77
TraesCS5D01G381300.1	Wheat	mitochondrion	24.28	13.67
TraesCS5B01G373900.1	Wheat	mitochondrion	24.28	13.63
HORVU5Hr1G007680.4	Barley	mitochondrion	24.76	13.32
Os12t0620600-01	Rice	mitochondrion	23.8	13.15
PGSC0003DMT400005067	Potato	cytosol	8.41	12.77
Zm00001d041287_P001	Maize	mitochondrion	23.56	12.58
GSMUA_Achr4P31330_001	Banana	mitochondrion	25.48	12.57
KXG24034	Sorghum	mitochondrion	23.32	12.42
GSMUA_Achr8P04760_001	Banana	mitochondrion	23.08	12.36
GSMUA_Achr8P26590_001	Banana	mitochondrion	25.48	9.11
PGSC0003DMT400082714	Potato	nucleus	11.78	8.52
AT2G10560.1	Thale cress	nucleus	0.0	0.0

Protein Annotations

EnsemblPlants:PGSC0003DMT400056835	EnsemblPlantsGene:PGSC0003DMG400022108	ncoils:Coil	PANTHER:PTHR31182	PANTHER:PTHR31182:SF2	PGSC:PGSC0003DMG400022108
SEG:seg	UniParc:UPI000296C6CE	UniProt:M1BZY5	MapMan:35.2	:	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400022108]

Coordinates

chr00:-:39403753..39405178

Molecular Weight (calculated)

20997.1 Da

IEP (calculated)

6.140

GRAVY (calculated)

-0.383

Length

416 amino acids

Sequence
(BLAST)

001: MSMRKSFSYE TLAYAKHAGG SCYTNTSGSE DEDLIFYSHH KSVAGRVYAE GATGEGQQSS KRKILPWRKR KLSFRSPKPK GEPLLKKHYG EEGGDDIDFD
101: RRQLSSSDES SSGWNKSEEG STANGFPVSE FGEDSFAVGS WEQKEIVSRD GQMKLQTEVF FASIDQRNER AAGESACTAL VAVIADWXXX XXXXXXXXXX
201: XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
301: XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
401: XXXXXXXXXX XXXXQR

Best Arabidopsis Sequence Match ( AT3G11760.1 )
(BLAST)

001: MVVKMMKWRP WPPLVTRKYE VKLSVKKLEG WDLVREGVPE KDRLTVEIRW KGPKATLGSL RRSVKRNFTK EAVGESDVVS WEDEEFQSLC SLTSYKDSLF
101: YPWEITFSVF TNGMKQGQKN KAPVVGTAFL NLAEYACVTD KKEFDINIPL TLSACVASET HPLLFVSLSL LELRTTPETS DSAAQTAVVP LPLPSPSPQQ
201: PTETHSVEKE DVSAIKAGLR KVKIFTEFVS TRKAKKACRE EEGRFSSFES SESLDDFETD FDEGKEELMS MRKSFSYGPL SYANGVGTSL NCGAKVSDED
301: EDWVYYSHRK SDVGAGCSDA EDSAAGLVYE ASLLPRRSIL PWRKRKLSFR SPKSKGEPLL KKDNGEEGGD DIDFDRRQLS SDEAHPPFGS KIDEDSSANP
401: RTSFSEFGED SFAIGSWEEK EVISRDGHMK LQTSVFLASI DQRSERAAGE SACTALVAVI ADWFQKNGNL MPIKSQFDSL IREGSLEWRN LCENETYMQK
501: FPDKHFDLDT VLQAKIRPLT VIPGKSFVGF FHPDGMINEG RFEFLQGAMS FDSIWAEIIS LEESSANGDS YDDDSPPHVY IVSWNDHFFV LKVEKEAYYI
601: IDTLGERLYE GCDQAYVLKF DHKTVIHKIL HTEEAGSESE PESEILSRGK ESCKEYIKNF LAAIPIRELQ EDIKKGLAST APVHHRLQIE FHYTTNAEIT
701: SL

Arabidopsis Description

F26K24.5 protein [Source:UniProtKB/TrEMBL;Acc:Q9SF22]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.