Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, extracellular
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 3
- extracellular 2
- endoplasmic reticulum 2
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX70194 | Canola | extracellular, vacuole | 93.89 | 96.38 |
| AT5G04860.1 | Thale cress | endoplasmic reticulum, extracellular | 76.12 | 71.74 |
| AT2G10560.1 | Thale cress | nucleus | 24.29 | 64.39 |
| PGSC0003DMT400005067 | Potato | cytosol | 19.95 | 53.65 |
| PGSC0003DMT400036595 | Potato | nucleus, plastid | 22.52 | 47.16 |
| GSMUA_Achr5P02610_001 | Banana | mitochondrion | 44.37 | 46.19 |
| GSMUA_Achr6P31090_001 | Banana | mitochondrion | 44.23 | 45.72 |
| Bra038679.1-P | Field mustard | cytosol | 42.61 | 45.11 |
| GSMUA_Achr2P12860_001 | Banana | mitochondrion | 43.55 | 44.34 |
| KRH34623 | Soybean | cytosol, extracellular, nucleus | 42.47 | 44.08 |
| Solyc11g006410.1.1 | Tomato | nucleus | 44.5 | 42.99 |
| PGSC0003DMT400065418 | Potato | extracellular, golgi | 44.37 | 42.8 |
| TraesCS5B01G026400.1 | Wheat | mitochondrion | 42.61 | 42.55 |
| Os12t0620600-01 | Rice | mitochondrion | 43.42 | 42.5 |
| TraesCS5A01G027200.1 | Wheat | mitochondrion | 43.01 | 42.49 |
| TraesCS5D01G035100.1 | Wheat | mitochondrion | 42.61 | 42.2 |
| Zm00001d033510_P001 | Maize | mitochondrion | 43.69 | 42.15 |
| Os03t0649000-01 | Rice | mitochondrion | 44.78 | 42.09 |
| TraesCS5A01G371800.1 | Wheat | mitochondrion | 41.93 | 41.7 |
| HORVU5Hr1G092510.5 | Barley | mitochondrion | 43.28 | 41.43 |
| TraesCS5D01G381300.1 | Wheat | mitochondrion | 41.52 | 41.41 |
| TraesCS5B01G373900.1 | Wheat | mitochondrion | 41.52 | 41.3 |
| KXG37933 | Sorghum | mitochondrion | 42.88 | 41.04 |
| HORVU5Hr1G007680.4 | Barley | mitochondrion | 42.88 | 40.88 |
| GSMUA_Achr4P31330_001 | Banana | mitochondrion | 45.45 | 39.74 |
| KXG24034 | Sorghum | mitochondrion | 41.66 | 39.31 |
| Zm00001d041287_P001 | Maize | mitochondrion | 40.98 | 38.77 |
| Zm00001d021933_P001 | Maize | cytosol | 19.0 | 38.67 |
| GSMUA_Achr8P04760_001 | Banana | mitochondrion | 39.48 | 37.45 |
| Bra007798.1-P | Field mustard | golgi, mitochondrion, nucleus, plastid | 25.51 | 35.01 |
| GSMUA_Achr8P26590_001 | Banana | mitochondrion | 42.47 | 26.89 |
| KRH07454 | Soybean | endoplasmic reticulum | 6.92 | 26.56 |
| Zm00001d032528_P001 | Maize | plastid | 15.88 | 26.0 |
| Solyc04g009790.2.1 | Tomato | extracellular, golgi, plasma membrane | 44.1 | 25.9 |
| PGSC0003DMT400056835 | Potato | cytosol, nucleus | 14.11 | 25.0 |
Protein Annotations
Description
AT5G04860 (E=0.0) | unknown protein
Coordinates
chrA10:+:16560359..16563188
Molecular Weight (calculated)
84017.4 Da
IEP (calculated)
4.941
GRAVY (calculated)
-0.636
Length
737 amino acids
Sequence
(BLAST)
(BLAST)
001: MVVKMKQIMR WPPWPPLFAV KFDVIVAVHR IEGLNPDNGD KRRRPVVEIK WRGPRAVTLK RSSVERNHTE EGGFRGDGVV EWNEEFKRVC EFSVYKEGEF
101: LPWIVSFTVF NGLSQGTKEK VRSFGKASLN IAEFFSLMKE DDVQVKVPLK MRGSSSSSSA CLHISLQFFS KESLPERQRS ALPVLWSPLS GEAEKAESVV
201: KVGLRKMKTF NHCMSIRQAS EKEETSKKDA SSGSETRSPE RSLDSESSYP FDTDSQDEGD AADESEESNA SGVVQPITYK TLRYANWARG SFHAGTNPED
301: DDLIYYSHRS PSAERGDEVL SDAVSSEQKK RMLSWKKRKL SFRSSKQKGE PLLKKDCLED GGDDIDYDRR QLSSSDESTS DWYKSDDSVM KPLSEFGDDD
401: FVVGSWETRD ITSRDGLMKL KARVFLASID QRSERAAGES ACTALVAVMA HWLGSNRDII PTRSEFDSLI REGSSEWRNL CEKEEYMERF PDKHFDLETV
501: LQAKIRPICV VPEKSFIGFF HPEKEEEEDA SLDFLRDVMS FDSIWEEIMR HEPEESGSEP VIYIVSWNDH FFVLLVDHDA YYIIDTLGER LYEGCNQAYV
601: LKFDKDAEIQ RLKPEVKEKN KSEQVERSTT ESDEQEEEEV VVCSRGKESC REYIKSFLAA IPIQQAKADM KKGLVSSVHH RLQIELHFTR HLQQQQPNLL
701: LLESSAREAN VAWSVASGYS NSGGFGCEVT ELMGVEV
101: LPWIVSFTVF NGLSQGTKEK VRSFGKASLN IAEFFSLMKE DDVQVKVPLK MRGSSSSSSA CLHISLQFFS KESLPERQRS ALPVLWSPLS GEAEKAESVV
201: KVGLRKMKTF NHCMSIRQAS EKEETSKKDA SSGSETRSPE RSLDSESSYP FDTDSQDEGD AADESEESNA SGVVQPITYK TLRYANWARG SFHAGTNPED
301: DDLIYYSHRS PSAERGDEVL SDAVSSEQKK RMLSWKKRKL SFRSSKQKGE PLLKKDCLED GGDDIDYDRR QLSSSDESTS DWYKSDDSVM KPLSEFGDDD
401: FVVGSWETRD ITSRDGLMKL KARVFLASID QRSERAAGES ACTALVAVMA HWLGSNRDII PTRSEFDSLI REGSSEWRNL CEKEEYMERF PDKHFDLETV
501: LQAKIRPICV VPEKSFIGFF HPEKEEEEDA SLDFLRDVMS FDSIWEEIMR HEPEESGSEP VIYIVSWNDH FFVLLVDHDA YYIIDTLGER LYEGCNQAYV
601: LKFDKDAEIQ RLKPEVKEKN KSEQVERSTT ESDEQEEEEV VVCSRGKESC REYIKSFLAA IPIQQAKADM KKGLVSSVHH RLQIELHFTR HLQQQQPNLL
701: LLESSAREAN VAWSVASGYS NSGGFGCEVT ELMGVEV
001: MVVKMKQIMR WPPWPPLFAV KFDVIVVVHQ MDGLLDSDGG GDDSTDQSQR GGGTTTRKRP VVEIKWKGPK SVTLKRSVVR NLTEEGGFRG DGVVEWNEEF
101: KRVCEFSVYK EGSFLPWFVS LTVFSGLNQG SKEKVRSFGK ASLNIAEYFS LMKEDDVQVK VPLKDCDSSS VRSPHVHISL QFSPKESLPE RQRSALPVLW
201: SPLSAEAEKA ESVVKVGLRK MKTFNNCMSS TQASEKESEK DGSSGSGSDG KSPERNLDSD SSYPFDTDSL DEGDAADESE ENKENESSLA DPVNYKTLRS
301: ANWARGSFHT VTNPEDEDLI YYSHRSPLAE TGHCSDEVSN DVVSLEQAKG QMSKKRMLSW KKRKLSFRSP KQKGEPLLKK DCLEEGGDDI DFDRRQLSSS
401: DESNSDWYRS DDAIMKPLSQ FGDDDFVVGS WETKEIISRD GLMKLTARVF LASIDQRSER AAGESACTAL VAVMAHWLGS NRDIIPTRSE FDSLIREGSS
501: EWRNMCENEE YRERFPDKHF DLETVLQAKV RPICVVPERS FIGFFHPEKS EEEEGKEDAS LDFLKGVMSF DSIWEELMKQ EPEESASEPV IYIVSWNDHF
601: FVLLVNHDAY YIIDTLGERL YEGCNQAYVL KFDKDAEIKR LPSVIKDNKA DMGNQKQGGK NKSEQPERSK ESEEQEEEEV VCRGKESCRE YIKSFLAAIP
701: IQQVKADMKK GLVSSLHHRL QIELHYTKHL HHHQPNMFES SATEVTVSEA AVSVTVAWSL ASQFSNSGGF SCEMAELLGV KV
101: KRVCEFSVYK EGSFLPWFVS LTVFSGLNQG SKEKVRSFGK ASLNIAEYFS LMKEDDVQVK VPLKDCDSSS VRSPHVHISL QFSPKESLPE RQRSALPVLW
201: SPLSAEAEKA ESVVKVGLRK MKTFNNCMSS TQASEKESEK DGSSGSGSDG KSPERNLDSD SSYPFDTDSL DEGDAADESE ENKENESSLA DPVNYKTLRS
301: ANWARGSFHT VTNPEDEDLI YYSHRSPLAE TGHCSDEVSN DVVSLEQAKG QMSKKRMLSW KKRKLSFRSP KQKGEPLLKK DCLEEGGDDI DFDRRQLSSS
401: DESNSDWYRS DDAIMKPLSQ FGDDDFVVGS WETKEIISRD GLMKLTARVF LASIDQRSER AAGESACTAL VAVMAHWLGS NRDIIPTRSE FDSLIREGSS
501: EWRNMCENEE YRERFPDKHF DLETVLQAKV RPICVVPERS FIGFFHPEKS EEEEGKEDAS LDFLKGVMSF DSIWEELMKQ EPEESASEPV IYIVSWNDHF
601: FVLLVNHDAY YIIDTLGERL YEGCNQAYVL KFDKDAEIKR LPSVIKDNKA DMGNQKQGGK NKSEQPERSK ESEEQEEEEV VCRGKESCRE YIKSFLAAIP
701: IQQVKADMKK GLVSSLHHRL QIELHYTKHL HHHQPNMFES SATEVTVSEA AVSVTVAWSL ASQFSNSGGF SCEMAELLGV KV
Arabidopsis Description
Splicing factor 3A subunit [Source:UniProtKB/TrEMBL;Acc:Q9FMC4]
SUBAcon: [endoplasmic reticulum,extracellular]
SUBAcon: [endoplasmic reticulum,extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.