Factsheet for Solyc08g059710.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400082714	Potato	nucleus	79.93	77.57
VIT_04s0008g05510.t01	Wine grape	nucleus	38.53	36.07
CDY11529	Canola	golgi, mitochondrion, nucleus, plastid	33.15	34.51
AT2G25460.2	Thale cress	cytosol, mitochondrion, nucleus, plastid	33.69	34.43
CDX76759	Canola	golgi, mitochondrion, nucleus, plastid	32.97	34.14
GSMUA_Achr5P06470_001	Banana	nucleus	28.85	34.11
Bra007798.1-P	Field mustard	golgi, mitochondrion, nucleus, plastid	32.8	34.08
Os01t0194000-01	Rice	cytosol	28.85	33.33
KRH52431	Soybean	golgi, mitochondrion, nucleus, plastid	36.56	32.8
KRH61765	Soybean	mitochondrion	36.2	32.42
KRH15881	Soybean	cytosol	35.3	32.14
KRH05176	Soybean	cytosol	35.13	31.97
EES00132	Sorghum	mitochondrion	29.93	31.63
TraesCS3B01G124200.1	Wheat	mitochondrion	31.18	29.39
TraesCS3A01G105700.1	Wheat	mitochondrion	31.36	29.12
TraesCS3D01G107900.2	Wheat	mitochondrion	31.54	27.72
Solyc01g006890.2.1	Tomato	mitochondrion	36.74	26.8
HORVU3Hr1G019320.2	Barley	cytosol, plastid	29.75	26.69
Solyc11g006410.1.1	Tomato	nucleus	34.95	25.56
Zm00001d039472_P001	Maize	mitochondrion	20.25	23.89
Zm00001d008799_P001	Maize	mitochondrion, plastid	17.74	21.57
Solyc04g009790.2.1	Tomato	extracellular, golgi, plasma membrane	34.23	15.22

Protein Annotations

EnsemblPlants:Solyc08g059710.2.1	EnsemblPlantsGene:Solyc08g059710.2	InterPro:IPR019448	InterPro:NT-C2	PANTHER:PTHR31182	PFAM:PF10358
PFscan:PS51840	SEG:seg	UniParc:UPI000276C880	UniProt:K4CKL5	MapMan:35.2	:

Description

No Description!

Coordinates

chr8:-:44784776..44788034

Molecular Weight (calculated)

64545.3 Da

IEP (calculated)

6.116

GRAVY (calculated)

-0.512

Length

558 amino acids

Sequence
(BLAST)

001: MAVTRKYKVK IRPLKVELEV DDFDKENEES RKVKMMTIEV KWKGESKFGL VQFYKYKKDF TSRRFMKDNC VKWDNDADEF ENVCCFTENQ SLKKYSAWDV
101: TFNVLYATNF QKMMLIGKVV VNVAELGARR MCFVQEKVPI TLNIGKTSIS AMLHVNITFG EIKDSVESRQ LKWLSKSSSV CERKLDESST FEAEVPKGIE
201: SSSQTQPDLV KKVGWFSWKR RRLSREEALI NRSCSFGVES PLNQQNVEKP GPCGAESRDQ NEGSRKKPDW EVTELQSRDR QTKLKTDVFF ASFDQCSDKA
301: AGESACTALV VVFSHWLQSN RDAMPTRSEF DYLILHGSSE WRKLCQNDTY INDFPNKHFD LETVLHAGIR PIYISHDQSF VGFFSPEKFD SLQGVMSFDQ
401: IWDKISSVTA DGIEFEPKVY IISWNDHFFI LKVEANAYYI IDTLGERLYE GCSNAYILRF DDNSMIYENI VAEEEKSQKN DKEEMIWKGK ECCREFIKRF
501: LAAIPLKEVE EQEKKETVSY VSLHHRLQIE FNLSYLLSSS SSSLTSSPFS SSSTTSTL

Best Arabidopsis Sequence Match ( AT2G25460.2 )
(BLAST)

001: MAKKVRKLHV TVKPVRLDGL PAILGDETAG KNLSAMVEVK WKGPVSGFGL GFVPFYRSNR PVNHTSSKPI ALGSNHVEWE EEFERVCCIV GPWNLSFNVF
101: YGENMDAKNK KSLIGKASLD LSELASKQES TVERKLPIRS KGSVLSKEAT LVVNVTFSEV RTEPDDFMQL GQISVDSAIP KKKSTSRRGG GSHFDSFSSP
201: ATASSSGGRS PVVETGLFSS PDENQSEPGQ KAGFNWWKRR RLSFSMTWRR EPREDEVTKT STKPSEELEK PATEIPIEAN KWVMKDLVSR DGKSKLKSEV
301: YLASIDQRSE QAAGEAACAA VAVVVAHWFH ANPKLINPSG TAFDSLITQG SSLWQSLCDK ESYLRLFPNR HFDLETIVSA NLRPVRVCTD KSFTGLFSPE
401: RFASLDGLMS FDQIWDEVEK EVALASSNGE TRVYIVSWND HFFVVKADLD GFCVIDSLGE RLFEGCKQAY ILKFDDSSLM YEKEESSEKL VCEGKKCCRE
501: YIKSFLAAIP VAELAAKEEK GNVVDVSLLH ERLQIDLHHI ILTSSD

Arabidopsis Description

CONTAINS InterPro DOMAIN/s: C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G04860.1); Has 108 Blast hits to 69 proteins in 11 species: Archae - 0; Bacteria - 0; Meta /.../0; Fungi - 0; Plants - 108; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). [Source:TAIR;Acc:AT2G25460]
SUBAcon: [mitochondrion,plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.