Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 1
- mitochondrion 3
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400082714 | Potato | nucleus | 38.26 | 39.65 |
| KRH52431 | Soybean | golgi, mitochondrion, nucleus, plastid | 40.27 | 38.59 |
| Solyc08g059710.2.1 | Tomato | nucleus | 36.07 | 38.53 |
| KRH61765 | Soybean | mitochondrion | 39.43 | 37.72 |
| KRH15881 | Soybean | cytosol | 38.76 | 37.68 |
| KRH05176 | Soybean | cytosol | 38.09 | 37.03 |
| CDX76759 | Canola | golgi, mitochondrion, nucleus, plastid | 32.72 | 36.18 |
| Bra007798.1-P | Field mustard | golgi, mitochondrion, nucleus, plastid | 32.55 | 36.13 |
| CDY11529 | Canola | golgi, mitochondrion, nucleus, plastid | 32.38 | 36.01 |
| AT2G25460.2 | Thale cress | cytosol, mitochondrion, nucleus, plastid | 32.89 | 35.9 |
| VIT_13s0019g03570.t01 | Wine grape | cytosol | 22.65 | 33.09 |
| EES00132 | Sorghum | mitochondrion | 28.36 | 32.01 |
| Os01t0194000-01 | Rice | cytosol | 25.84 | 31.88 |
| GSMUA_Achr5P06470_001 | Banana | nucleus | 25.17 | 31.78 |
| VIT_08s0032g01040.t01 | Wine grape | mitochondrion, nucleus | 36.58 | 29.07 |
| TraesCS3B01G124200.1 | Wheat | mitochondrion | 28.02 | 28.21 |
| TraesCS3A01G105700.1 | Wheat | mitochondrion | 27.68 | 27.45 |
| TraesCS3D01G107900.2 | Wheat | mitochondrion | 27.68 | 25.98 |
| HORVU3Hr1G019320.2 | Barley | cytosol, plastid | 26.51 | 25.4 |
| Zm00001d039472_P001 | Maize | mitochondrion | 19.63 | 24.74 |
| Zm00001d008799_P001 | Maize | mitochondrion, plastid | 17.79 | 23.09 |
Protein Annotations
| EntrezGene:100264556 | wikigene:100264556 | MapMan:35.2 | EMBL:AM481941 | ProteinID:CAN68625 | ProteinID:CAN68625.1 |
| ProteinID:CCB46808 | ProteinID:CCB46808.1 | UniProt:F6H330 | EMBL:FN595231 | InterPro:IPR019448 | EntrezGene:LOC100264556 |
| wikigene:LOC100264556 | InterPro:NT-C2 | PFAM:PF10358 | PFscan:PS51840 | PANTHER:PTHR31182 | PANTHER:PTHR31182:SF11 |
| UniParc:UPI0002108FD8 | ArrayExpress:VIT_04s0008g05510 | EnsemblPlantsGene:VIT_04s0008g05510 | EnsemblPlants:VIT_04s0008g05510.t01 | unigene:Vvi.15762 | RefSeq:XP_002282692 |
| RefSeq:XP_002282692.2 | RefSeq:XP_002282692.3 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr4:+:4971042..4974572
Molecular Weight (calculated)
66655.4 Da
IEP (calculated)
7.668
GRAVY (calculated)
-0.491
Length
596 amino acids
Sequence
(BLAST)
(BLAST)
001: MKWLPWPSTS ASRNFQVKVH GFKLQGFNLQ DTESSQDKFM VLAMKLKRPC NSGLFSFHRK YQKFSSQVFL TRAESIEWHQ EFDAVCSLSV SQKDHSLRPR
101: HVSFSILHGE GRELKAKSVV LGKVSLNLAE LASKMETDIQ TKLPISLQVA GIAMEATLSV SVSFMELRNA QDSTQLGQNP TKSDHGDRFS RRLEGLNPNA
201: NNQKMNQEVS TDYSDESALF DSDDPSMESS SSTESGSSPS SDTQSDPVRM TGSWKRRRCF TPARTKVDPL IKNTRVVKDV NETNSGSTRK TDSEKPTFQS
301: DSQYPKCNTG SWEVKEVESR DGQAKLKASV FFASFDQCSV QAAGQSACTA LVAVVAHWLH SNQYILPTRS QFDNLLTQGS SEWRKLCNNH IYQGCFPDKH
401: FDLETVLQAD LRPLSVLPDK SLVGFFSPEK FVSLEGTVSF EGIWNEINGQ NEDQEPRVYI VSWNDHFFVL KVEAQACYII DSLGKRLFEG CNQAYILKFD
501: GSAVMYGKAK KDGAINNEKG EIICRGKECC KEFIKRFLAA IPVGELEVEQ KKGTVSLVTL YRRLQIDFHF TSSSPSSSFS PSIPATSSTS SLSSKE
101: HVSFSILHGE GRELKAKSVV LGKVSLNLAE LASKMETDIQ TKLPISLQVA GIAMEATLSV SVSFMELRNA QDSTQLGQNP TKSDHGDRFS RRLEGLNPNA
201: NNQKMNQEVS TDYSDESALF DSDDPSMESS SSTESGSSPS SDTQSDPVRM TGSWKRRRCF TPARTKVDPL IKNTRVVKDV NETNSGSTRK TDSEKPTFQS
301: DSQYPKCNTG SWEVKEVESR DGQAKLKASV FFASFDQCSV QAAGQSACTA LVAVVAHWLH SNQYILPTRS QFDNLLTQGS SEWRKLCNNH IYQGCFPDKH
401: FDLETVLQAD LRPLSVLPDK SLVGFFSPEK FVSLEGTVSF EGIWNEINGQ NEDQEPRVYI VSWNDHFFVL KVEAQACYII DSLGKRLFEG CNQAYILKFD
501: GSAVMYGKAK KDGAINNEKG EIICRGKECC KEFIKRFLAA IPVGELEVEQ KKGTVSLVTL YRRLQIDFHF TSSSPSSSFS PSIPATSSTS SLSSKE
001: MAKKVRKLHV TVKPVRLDGL PAILGDETAG KNLSAMVEVK WKGPVSGFGL GFVPFYRSNR PVNHTSSKPI ALGSNHVEWE EEFERVCCIV GPWNLSFNVF
101: YGENMDAKNK KSLIGKASLD LSELASKQES TVERKLPIRS KGSVLSKEAT LVVNVTFSEV RTEPDDFMQL GQISVDSAIP KKKSTSRRGG GSHFDSFSSP
201: ATASSSGGRS PVVETGLFSS PDENQSEPGQ KAGFNWWKRR RLSFSMTWRR EPREDEVTKT STKPSEELEK PATEIPIEAN KWVMKDLVSR DGKSKLKSEV
301: YLASIDQRSE QAAGEAACAA VAVVVAHWFH ANPKLINPSG TAFDSLITQG SSLWQSLCDK ESYLRLFPNR HFDLETIVSA NLRPVRVCTD KSFTGLFSPE
401: RFASLDGLMS FDQIWDEVEK EVALASSNGE TRVYIVSWND HFFVVKADLD GFCVIDSLGE RLFEGCKQAY ILKFDDSSLM YEKEESSEKL VCEGKKCCRE
501: YIKSFLAAIP VAELAAKEEK GNVVDVSLLH ERLQIDLHHI ILTSSD
101: YGENMDAKNK KSLIGKASLD LSELASKQES TVERKLPIRS KGSVLSKEAT LVVNVTFSEV RTEPDDFMQL GQISVDSAIP KKKSTSRRGG GSHFDSFSSP
201: ATASSSGGRS PVVETGLFSS PDENQSEPGQ KAGFNWWKRR RLSFSMTWRR EPREDEVTKT STKPSEELEK PATEIPIEAN KWVMKDLVSR DGKSKLKSEV
301: YLASIDQRSE QAAGEAACAA VAVVVAHWFH ANPKLINPSG TAFDSLITQG SSLWQSLCDK ESYLRLFPNR HFDLETIVSA NLRPVRVCTD KSFTGLFSPE
401: RFASLDGLMS FDQIWDEVEK EVALASSNGE TRVYIVSWND HFFVVKADLD GFCVIDSLGE RLFEGCKQAY ILKFDDSSLM YEKEESSEKL VCEGKKCCRE
501: YIKSFLAAIP VAELAAKEEK GNVVDVSLLH ERLQIDLHHI ILTSSD
Arabidopsis Description
CONTAINS InterPro DOMAIN/s: C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G04860.1); Has 108 Blast hits to 69 proteins in 11 species: Archae - 0; Bacteria - 0; Meta /.../0; Fungi - 0; Plants - 108; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). [Source:TAIR;Acc:AT2G25460]
SUBAcon: [mitochondrion,plastid,nucleus,cytosol]
SUBAcon: [mitochondrion,plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.