CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

nucleus 1
mitochondrion 4
cytosol 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX72943
CDX96432
CDY35917
CDY40468

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G40330.1	CDX72943	AT1G72770.1	19407142
AT2G40330.1	CDX96432	AT1G72770.1	19407142
AT2G40330.1	CDX72943	AT1G72770.1	19624469
AT2G40330.1	CDX96432	AT1G72770.1	19624469
AT2G40330.1	CDY35917	AT2G20000.1	17944809
AT2G40330.1	CDY40468	AT2G20000.1	17944809

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra000184.1-P	Field mustard	cytosol, mitochondrion	100.0	100.0
CDY24911	Canola	cytosol, mitochondrion	94.34	93.9
CDY52923	Canola	cytosol	85.38	88.29
CDX93191	Canola	cytosol	83.49	87.19
AT2G40330.1	Thale cress	cytosol	84.43	83.26
CDX74796	Canola	cytosol, nucleus, plastid	82.08	82.08
CDY18867	Canola	cytosol, mitochondrion, nucleus, plastid	81.6	81.6
Solyc05g052420.1.1	Tomato	cytosol	22.64	58.54
TraesCS4A01G114400.1	Wheat	cytosol	48.11	56.98
Solyc03g095780.1.1	Tomato	plastid	52.36	55.22
TraesCS1B01G306800.1	Wheat	mitochondrion	50.47	55.15
PGSC0003DMT400053120	Potato	cytosol, plastid	51.89	54.73
PGSC0003DMT400053119	Potato	cytosol, plastid	51.89	54.73
PGSC0003DMT400053102	Potato	cytosol, plastid	51.89	54.73
KRH73249	Soybean	plastid	53.3	54.33
CDY58053	Canola	cytosol	41.51	54.32
CDY68675	Canola	cytosol	41.51	54.32
TraesCS1D01G293600.1	Wheat	mitochondrion, plastid	50.94	53.73
TraesCS1A01G297600.1	Wheat	mitochondrion	50.47	53.23
CDY14471	Canola	plastid	51.89	53.14
CDY07739	Canola	plastid	51.89	53.14
CDY54415	Canola	cytosol	50.94	52.94
CDY18391	Canola	plastid	50.94	52.94
HORVU1Hr1G070420.1	Barley	mitochondrion	50.0	52.74
Zm00001d038436_P001	Maize	plastid	49.53	52.5
CDX91449	Canola	plastid	50.94	52.17
TraesCS3B01G380300.1	Wheat	mitochondrion, plastid	50.47	51.69
CDX98844	Canola	cytosol	49.53	51.47
HORVU3Hr1G088100.1	Barley	plastid	50.0	51.46
HORVU3Hr1G039010.1	Barley	plastid	50.0	51.46
CDY54453	Canola	plastid	50.47	51.44
CDY72318	Canola	cytosol	49.06	51.23
CDX80959	Canola	cytosol	49.06	51.23
GSMUA_Achr9P04600_001	Banana	cytosol	34.43	51.05
CDX70150	Canola	cytosol	49.06	50.98
TraesCS3D01G342000.1	Wheat	plastid	49.53	50.97
PGSC0003DMT400069734	Potato	mitochondrion, plastid	50.0	50.96
PGSC0003DMT400061535	Potato	plastid	52.36	50.92
CDY04951	Canola	cytosol	47.17	50.76
TraesCS3A01G348400.1	Wheat	plastid	49.06	50.49
KRH14908	Soybean	plastid	51.89	50.46
GSMUA_Achr6P32790_001	Banana	cytosol	50.0	50.24
Os05t0473000-01	Rice	cytosol	50.94	49.77
EES19683	Sorghum	plastid	50.47	49.54
CDX99450	Canola	cytosol	38.68	49.4
CDY58019	Canola	cytosol	38.68	49.4
CDX78879	Canola	cytosol	38.68	49.4
GSMUA_Achr9P17980_001	Banana	cytosol	34.43	48.99
GSMUA_AchrUn_...	Banana	plastid	36.32	48.73
TraesCS4D01G191200.1	Wheat	cytosol	51.42	48.66
TraesCS4B01G189800.1	Wheat	cytosol	51.42	48.66
Zm00001d043014_P001	Maize	cytosol	48.58	48.36
HORVU4Hr1G055220.1	Barley	cytosol	50.94	48.21
TraesCS2D01G087500.1	Wheat	plastid	48.58	48.13
TraesCS2B01G105300.1	Wheat	plastid	49.06	47.93
Zm00001d047705_P001	Maize	plastid	49.06	47.71
EER92405	Sorghum	plastid	49.53	47.3
Zm00001d028793_P001	Maize	cytosol, mitochondrion, plastid	48.58	46.82
Os03t0297600-01	Rice	cytosol	50.47	46.72
GSMUA_Achr11P...	Banana	cytosol, plastid	33.96	45.57
GSMUA_Achr5P29490_001	Banana	plastid	34.43	45.06
CDY11503	Canola	cytosol	39.62	44.68
CDX76731	Canola	cytosol	39.62	44.68
CDY15183	Canola	cytosol	39.15	44.38
CDY53905	Canola	cytosol	39.15	44.38
CDY25052	Canola	cytosol	38.68	43.85
CDX90028	Canola	cytosol	38.68	43.62
CDY04688	Canola	cytosol	38.21	43.55
GSMUA_Achr8P21220_001	Banana	cytosol	34.91	43.53
KRH31193	Soybean	cytosol, golgi, plastid	52.36	43.19
CDX89219	Canola	cytosol	37.26	42.7
CDY64350	Canola	cytosol	36.32	42.08
CDY38728	Canola	cytosol	36.32	41.85
Solyc06g050500.2.1	Tomato	plastid	53.77	41.45
CDY61488	Canola	cytosol	35.85	41.3
CDY49462	Canola	cytosol	35.85	41.3
CDY70517	Canola	cytosol	35.85	41.08
Os01t0827800-00	Rice	plastid	49.53	41.02
CDX96197	Canola	cytosol	36.32	40.96
CDX74368	Canola	cytosol	36.79	40.41
CDY01498	Canola	cytosol	36.32	40.31
CDX90440	Canola	cytosol	36.32	40.31
CDX91871	Canola	cytosol	36.32	39.9
CDY27022	Canola	cytosol	35.38	39.89
CDY70860	Canola	cytosol	34.91	39.78
CDY22516	Canola	plastid	38.21	39.51
CDY48030	Canola	plastid	38.21	39.51
CDX82120	Canola	plastid	38.21	39.51
CDY69797	Canola	cytosol	34.91	38.74
GSMUA_Achr10P...	Banana	cytosol, plastid	35.85	38.38
CDY58505	Canola	nucleus	36.32	36.67
CDY68316	Canola	nucleus	32.55	36.13
OQU87775	Sorghum	endoplasmic reticulum, extracellular	46.23	36.03
TraesCS2A01G089400.1	Wheat	plastid	48.58	36.01
CDX77691	Canola	nucleus	36.32	35.81
CDY03194	Canola	nucleus	32.08	35.6
CDX76554	Canola	cytosol	25.94	35.48
CDY08877	Canola	cytosol	25.94	35.48
CDY07165	Canola	cytosol	9.43	33.33
Zm00001d012475_P001	Maize	cytosol	47.64	32.37

Protein Annotations

EnsemblPlants:CDY07608	EnsemblPlantsGene:GSBRNA2T00124705001	Gene3D:3.30.530.20	InterPro:IPR023393	InterPro:Polyketide_cyclase/dehydratase	InterPro:START-like_dom_sf
PANTHER:PTHR31213	PANTHER:PTHR31213:SF3	PFAM:PF10604	ProteinID:CDY07608	ProteinID:CDY07608.1	SEG:seg
SUPFAM:SSF55961	UniParc:UPI00025402CF	UniProt:A0A078F7I2	MapMan:11.1.2.1.1.1	:	:

Description

BnaA03g19030DBnaA03g19030D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F7I2]

Coordinates

chrLK031980:+:47974..48671

Molecular Weight (calculated)

23525.7 Da

IEP (calculated)

7.074

GRAVY (calculated)

-0.347

Length

212 amino acids

Sequence
(BLAST)

001: MPTSIQFRRY STTAEAANAT VSTYHHHHHK HLQKVILTRG MADVPEHVEL SHTHVVGPSQ CFSVVVQDVD APSSAVWSIL SRFEHPQAYK HFVRSCHVAV
101: GDGREAGSVR EVRVVSGLPA TFSLERLEIM DEGHHIMSFS VVGGDHRLQN YRSVTTVNES PDDNKKTRVV ESYVVDVPAG NDKEETCSFA DTIVRCNLQS
201: LAKLAEKPSK LS

Best Arabidopsis Sequence Match ( AT2G26040.1 )
(BLAST)

001: MSSSPAVKGL TDEEQKTLEP VIKTYHQFEP DPTTCTSLIT QRIHAPASVV WPLIRRFDNP ERYKHFVKRC RLISGDGDVG SVREVTVISG LPASTSTERL
101: EFVDDDHRVL SFRVVGGEHR LKNYKSVTSV NEFLNQDSGK VYTVVLESYT VDIPEGNTEE DTKMFVDTVV KLNLQKLGVA ATSAPMHDDE

Arabidopsis Description

PYL2Abscisic acid receptor PYL2 [Source:UniProtKB/Swiss-Prot;Acc:O80992]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.