Skip to main content
crop-pal logo
Canola
Search for another protein from :
Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 2
  • cytosol 2
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, nucleus
BaCelLo:nucleus
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX72943
CDX89368
CDX92752
CDX94382
CDX96432
CDY14318
CDY38260
CDY42756
CDY50002
CDY50003
CDY54381

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G05440.1 CDX72943 AT1G72770.1 19407142
AT5G05440.1 CDX96432 AT1G72770.1 19407142
AT5G05440.1 CDX72943 AT1G72770.1 19624469
AT5G05440.1 CDX96432 AT1G72770.1 19624469
AT5G05440.1 CDX89368 AT4G26080.1 21798944
AT5G05440.1 CDX92752 AT4G26080.1 21798944
AT5G05440.1 CDX94382 AT4G26080.1 21798944
AT5G05440.1 CDY14318 AT4G26080.1 21798944
AT5G05440.1 CDY42756 AT4G26080.1 21798944
AT5G05440.1 CDY50002 AT4G26080.1 21798944
AT5G05440.1 CDY50003 AT4G26080.1 21798944
AT5G05440.1 CDY38260 AT5G57050.1 21798944
AT5G05440.1 CDY54381 AT5G57050.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX70150 Canola cytosol 99.02 99.02
AT5G05440.1 Thale cress cytosol 95.59 96.06
CDY04951 Canola cytosol 89.71 92.89
CDY72318 Canola cytosol 92.16 92.61
CDX80959 Canola cytosol 91.67 92.12
GSMUA_Achr9P04600_001 Banana cytosol 41.18 58.74
TraesCS4A01G114400.1 Wheat cytosol 50.49 57.54
TraesCS1B01G306800.1 Wheat mitochondrion 54.41 57.22
CDY18391 Canola plastid 56.86 56.86
CDY54415 Canola cytosol 56.86 56.86
CDX91449 Canola plastid 57.35 56.52
CDY07739 Canola plastid 56.86 56.04
CDY54453 Canola plastid 56.86 55.77
CDY14471 Canola plastid 56.37 55.56
TraesCS1D01G293600.1 Wheat mitochondrion, plastid 54.41 55.22
TraesCS1A01G297600.1 Wheat mitochondrion 54.41 55.22
Zm00001d038436_P001 Maize plastid 53.92 55.0
HORVU1Hr1G070420.1 Barley mitochondrion 53.92 54.73
GSMUA_Achr6P32790_001 Banana cytosol 55.39 53.55
HORVU3Hr1G039010.1 Barley plastid 52.94 52.43
HORVU3Hr1G088100.1 Barley plastid 52.94 52.43
TraesCS3D01G342000.1 Wheat plastid 52.94 52.43
TraesCS3A01G348400.1 Wheat plastid 52.94 52.43
TraesCS3B01G380300.1 Wheat mitochondrion, plastid 52.94 52.17
EES19683 Sorghum plastid 54.9 51.85
CDX93191 Canola cytosol 51.47 51.72
GSMUA_Achr9P17980_001 Banana cytosol 37.75 51.68
Zm00001d043014_P001 Maize cytosol 53.92 51.64
TraesCS2D01G087500.1 Wheat plastid 53.92 51.4
GSMUA_AchrUn_... Banana plastid 39.71 51.27
CDY52923 Canola cytosol 51.47 51.22
TraesCS2B01G105300.1 Wheat plastid 53.92 50.69
CDY68675 Canola cytosol 40.2 50.62
CDY58053 Canola cytosol 40.2 50.62
Os05t0473000-01 Rice cytosol 53.43 50.23
GSMUA_Achr11P... Banana cytosol, plastid 38.73 50.0
CDY07608 Canola cytosol, mitochondrion 51.47 49.53
GSMUA_Achr8P21220_001 Banana cytosol 41.18 49.41
Zm00001d047705_P001 Maize plastid 52.45 49.08
CDX74796 Canola cytosol, nucleus, plastid 50.98 49.06
CDY24911 Canola cytosol, mitochondrion 50.98 48.83
EER92405 Sorghum plastid 52.94 48.65
TraesCS4D01G191200.1 Wheat cytosol 52.94 48.21
TraesCS4B01G189800.1 Wheat cytosol 52.94 48.21
Zm00001d028793_P001 Maize cytosol, mitochondrion, plastid 51.96 48.18
HORVU4Hr1G055220.1 Barley cytosol 52.45 47.77
CDY18867 Canola cytosol, mitochondrion, nucleus, plastid 49.51 47.64
CDX99450 Canola cytosol 38.73 47.59
CDX78879 Canola cytosol 38.73 47.59
CDY58019 Canola cytosol 38.73 47.59
GSMUA_Achr5P29490_001 Banana plastid 37.75 47.53
Os03t0297600-01 Rice cytosol 52.45 46.72
CDY64350 Canola cytosol 41.18 45.9
CDY38728 Canola cytosol 41.18 45.65
CDX89219 Canola cytosol 41.18 45.41
CDY11503 Canola cytosol 41.67 45.21
CDY01498 Canola cytosol 42.16 45.03
CDX90440 Canola cytosol 42.16 45.03
CDY15183 Canola cytosol 41.18 44.92
CDY70517 Canola cytosol 40.69 44.86
CDX76731 Canola cytosol 41.18 44.68
CDY70860 Canola cytosol 40.69 44.62
CDX90028 Canola cytosol 40.69 44.15
CDY04688 Canola cytosol 40.2 44.09
CDY49462 Canola cytosol 39.71 44.02
CDY61488 Canola cytosol 39.71 44.02
CDY25052 Canola cytosol 40.2 43.85
CDX96197 Canola cytosol 40.2 43.62
CDY69797 Canola cytosol 40.69 43.46
CDY27022 Canola cytosol 39.71 43.09
CDY53905 Canola cytosol 39.22 42.78
GSMUA_Achr10P... Banana cytosol, plastid 40.69 41.92
Os01t0827800-00 Rice plastid 51.96 41.41
CDX74368 Canola cytosol 38.73 40.93
CDY48030 Canola plastid 40.69 40.49
CDY58505 Canola nucleus 41.67 40.48
CDY22516 Canola plastid 40.2 40.0
CDX82120 Canola plastid 40.2 40.0
CDX91871 Canola cytosol 37.75 39.9
CDX77691 Canola nucleus 41.67 39.53
CDX76554 Canola cytosol 29.9 39.35
TraesCS2A01G089400.1 Wheat plastid 54.41 38.81
CDY68316 Canola nucleus 36.27 38.74
CDY08877 Canola cytosol 29.41 38.71
OQU87775 Sorghum endoplasmic reticulum, extracellular 51.47 38.6
CDY03194 Canola nucleus 35.29 37.7
Zm00001d012475_P001 Maize cytosol 54.41 35.58
CDY07165 Canola cytosol 10.29 35.0
Protein Annotations
EnsemblPlants:CDX98844EnsemblPlantsGene:GSBRNA2T00106945001Gene3D:3.30.530.20InterPro:IPR023393InterPro:Polyketide_cyclase/dehydrataseInterPro:START-like_dom_sf
PANTHER:PTHR31213PANTHER:PTHR31213:SF3PFAM:PF10604ProteinID:CDX98844ProteinID:CDX98844.1SEG:seg
SUPFAM:SSF55961UniParc:UPI0004EB2D83MapMan:11.1.2.1.1.1:::
Description
BnaC09g49910D
Coordinates
chrLK031907:+:246328..247451
Molecular Weight (calculated)
22767.9 Da
IEP (calculated)
6.260
GRAVY (calculated)
-0.328
Length
204 amino acids
Sequence
(BLAST)
001: MRSPVQLHHG SDATNGFHTL QTHDQTDGLI RRVCLTRGMH VPEHVAMHHT HDVGPDQCCS SVVQMIHAPP ESVWALVRRF DNPKVYKNFI RQCRIVQGDG
101: LHAGDLREVM VVSGLPAVSS TERLEILDEE RHVISFSVVG GDHRLENYRS VTTLHASDDE GTVVVESYVV DVPPGNTEEE TVSFVDTIVR CNLQSLARSC
201: TNRQ
Best Arabidopsis Sequence Match ( AT5G05440.1 )
(BLAST)
001: MRSPVQLQHG SDATNGFHTL QPHDQTDGPI KRVCLTRGMH VPEHVAMHHT HDVGPDQCCS SVVQMIHAPP ESVWALVRRF DNPKVYKNFI RQCRIVQGDG
101: LHVGDLREVM VVSGLPAVSS TERLEILDEE RHVISFSVVG GDHRLKNYRS VTTLHASDDE GTVVVESYIV DVPPGNTEEE TLSFVDTIVR CNLQSLARST
201: NRQ
Arabidopsis Description
PYL5Abscisic acid receptor PYL5 [Source:UniProtKB/Swiss-Prot;Acc:Q9FLB1]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.