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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 1
  • cytosol 2
  • mitochondrion 1
  • extracellular 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, nucleus
BaCelLo:nucleus
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:extracellular
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX72943
CDX96432

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT4G27920.1 CDX72943 AT1G72770.1 19407142
AT4G27920.1 CDX96432 AT1G72770.1 19407142
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra026299.1-P Field mustard cytosol 99.46 100.0
CDY70517 Canola cytosol 96.76 96.76
AT4G27920.1 Thale cress cytosol 80.0 80.87
CDY61488 Canola cytosol 72.43 72.83
CDY49462 Canola cytosol 71.89 72.28
Solyc03g007310.2.1 Tomato cytosol 71.35 71.35
CDY38728 Canola cytosol 70.81 71.2
CDY64350 Canola cytosol 70.27 71.04
VIT_16s0050g02620.t01 Wine grape cytosol 70.81 70.81
PGSC0003DMT400023511 Potato cytosol 70.27 70.27
CDX96197 Canola cytosol 70.81 69.68
CDY27022 Canola cytosol 69.73 68.62
KRH65845 Soybean cytosol 70.81 67.88
KRH18155 Soybean cytosol 69.73 67.54
CDY25052 Canola cytosol 65.95 65.24
GSMUA_Achr10P... Banana cytosol 64.86 64.52
GSMUA_Achr2P19970_001 Banana cytosol 64.32 63.98
KRH53449 Soybean cytosol 65.95 63.87
CDY53905 Canola cytosol 63.78 63.1
GSMUA_Achr10P... Banana cytosol 62.7 62.37
CDY04688 Canola cytosol 62.7 62.37
CDY15183 Canola cytosol 62.7 62.03
CDX90028 Canola cytosol 62.7 61.7
GSMUA_AchrUn_... Banana cytosol 61.08 60.75
CDX74368 Canola cytosol 62.7 60.1
GSMUA_Achr3P03480_001 Banana cytosol 66.49 59.71
CDX91871 Canola cytosol 62.16 59.59
HORVU0Hr1G032390.2 Barley cytosol, extracellular 27.57 59.3
EES17886 Sorghum cytosol 61.62 57.87
Os02t0255500-01 Rice cytosol 63.78 57.84
Zm00001d010445_P001 Maize cytosol 61.08 57.36
Zm00001d037719_P001 Maize cytosol 61.08 57.36
GSMUA_Achr8P19910_001 Banana mitochondrion 63.78 56.46
TraesCS1D01G126900.1 Wheat cytosol 62.16 56.1
TraesCS1B01G145800.1 Wheat cytosol 62.16 56.1
TraesCS1A01G126800.1 Wheat cytosol 62.16 56.1
Zm00001d016105_P001 Maize cytosol 63.78 55.66
CDY07165 Canola cytosol 17.84 55.0
EES04864 Sorghum cytosol 62.7 54.98
Os05t0213500-01 Rice cytosol, nucleus 61.62 54.55
KRH65286 Soybean cytosol 26.49 53.85
Zm00001d002533_P001 Maize cytosol 36.22 53.17
Zm00001d053396_P001 Maize cytosol 61.62 52.53
Os02t0255300-00 Rice cytosol, plastid 50.27 51.67
GSMUA_Achr2P15420_001 Banana cytosol, mitochondrion, nucleus, plastid 63.24 51.32
KRH16733 Soybean cytosol 28.65 50.48
Os06t0528300-00 Rice cytosol 53.51 48.06
Os06t0527800-01 Rice cytosol 52.97 47.57
Os06t0526400-00 Rice cytosol 50.27 47.45
TraesCS7B01G232100.1 Wheat cytoskeleton, cytosol, nucleus 49.19 46.67
CDY58053 Canola cytosol 40.0 45.68
CDY68675 Canola cytosol 40.0 45.68
TraesCS7D01G328000.1 Wheat cytosol 48.11 45.18
HORVU7Hr1G079270.1 Barley cytosol 48.11 45.18
TraesCS7A01G350800.1 Wheat cytosol 45.95 43.15
CDY04951 Canola cytosol 44.86 42.13
CDX91449 Canola plastid 47.03 42.03
CDX78879 Canola cytosol 37.3 41.57
CDY07739 Canola plastid 46.49 41.55
CDY14471 Canola plastid 46.49 41.55
CDY54453 Canola plastid 46.49 41.35
CDX70150 Canola cytosol 45.41 41.18
CDY54415 Canola cytosol 45.41 41.18
CDX98844 Canola cytosol 45.41 41.18
CDY18391 Canola plastid 45.41 41.18
CDY58019 Canola cytosol 36.76 40.96
CDX99450 Canola cytosol 36.76 40.96
CDX76731 Canola cytosol 41.62 40.96
CDY11503 Canola cytosol 41.08 40.43
CDY72318 Canola cytosol 44.32 40.39
CDY70860 Canola cytosol 40.54 40.32
CDX80959 Canola cytosol 43.78 39.9
HORVU1Hr1G030390.2 Barley extracellular, mitochondrion, plasma membrane 62.16 39.52
CDX93191 Canola cytosol 43.24 39.41
CDY01498 Canola cytosol 40.54 39.27
CDX90440 Canola cytosol 40.54 39.27
CDY69797 Canola cytosol 40.54 39.27
CDY52923 Canola cytosol 43.24 39.02
HORVU3Hr1G054230.1 Barley mitochondrion 32.97 38.36
CDY24911 Canola cytosol, mitochondrion 43.24 37.56
CDY07608 Canola cytosol, mitochondrion 42.7 37.26
CDY18867 Canola cytosol, mitochondrion, nucleus, plastid 42.16 36.79
CDX74796 Canola cytosol, nucleus, plastid 42.16 36.79
CDY58505 Canola nucleus 41.08 36.19
CDX76554 Canola cytosol 30.27 36.13
CDY08877 Canola cytosol 29.73 35.48
CDX77691 Canola nucleus 41.08 35.35
CDY68316 Canola nucleus 34.59 33.51
CDY48030 Canola plastid 36.76 33.17
CDY03194 Canola nucleus 34.05 32.98
CDY22516 Canola plastid 36.22 32.68
CDX82120 Canola plastid 36.22 32.68
Os06t0526466-00 Rice cytosol, mitochondrion 21.08 28.26
Protein Annotations
EnsemblPlants:CDX89219EnsemblPlantsGene:GSBRNA2T00149406001Gene3D:3.30.530.20InterPro:IPR023393InterPro:Polyketide_cyclase/dehydrataseInterPro:START-like_dom_sf
PANTHER:PTHR31213PANTHER:PTHR31213:SF12PFAM:PF10604ProteinID:CDX89219ProteinID:CDX89219.1SUPFAM:SSF55961
UniParc:UPI0004EE8AADMapMan:11.1.2.1.1.1::::
Description
BnaA01g16740D
Coordinates
chrLK031858:-:220038..220809
Molecular Weight (calculated)
20785.0 Da
IEP (calculated)
5.835
GRAVY (calculated)
-0.151
Length
185 amino acids
Sequence
(BLAST)
001: MMNADETKNV ESDYIKMHHM HGELLESQCS STLVKHIKAP LHLVWSLVRR FDQPQKYKPF ISGCVVKDKK LEIGSVREVD VRSGLPATKS TEILEFLDDN
101: QHVLSIRIVG GDHRLKNYSS VISLHPETIE AKAGTLVIES FVVDVPEGNT KEETCFFVEA LIQCNLKSLA YVSESLEAES IAQMV
Best Arabidopsis Sequence Match ( AT4G27920.1 )
(BLAST)
001: MNGDETKKVE SEYIKKHHRH ELVESQCSST LVKHIKAPLH LVWSIVRRFD EPQKYKPFIS RCVVQGKKLE VGSVREVDLK SGLPATKSTE VLEILDDNEH
101: ILGIRIVGGD HRLKNYSSTI SLHSETIDGK TGTLAIESFV VDVPEGNTKE ETCFFVEALI QCNLNSLADV TERLQAESME KKI
Arabidopsis Description
PYL10RCAR4 [Source:UniProtKB/TrEMBL;Acc:A0A178V0C5]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.