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Thale cress
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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 3
  • mitochondrion 1
  • cytosol 2
  • extracellular 2
  • endoplasmic reticulum 2
  • vacuole 2
  • plasma membrane 2
  • golgi 2
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion, nucleus, secretory
BaCelLo:nucleus
iPSORT:mitochondrion
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:secretory
TargetP:secretory
WoLF PSORT:nucleus
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY30158 Canola cytosol 78.85 80.39
CDX97740 Canola cytosol 78.43 80.08
Bra027173.1-P Field mustard cytosol 73.08 67.77
Os06t0622500-00 Rice cytosol 29.95 57.37
GSMUA_Achr1P19740_001 Banana cytosol 47.94 46.41
TraesCS7B01G299300.1 Wheat cytosol, mitochondrion 45.33 45.71
KXG33895 Sorghum cytosol 47.25 45.62
AT2G20000.1 Thale cress cytosol 46.57 45.56
Zm00001d042523_P001 Maize cytosol 46.98 45.54
TraesCS7A01G398600.1 Wheat cytosol 46.7 44.85
TraesCS7D01G392900.2 Wheat cytosol 46.57 44.72
HORVU7Hr1G093620.9 Barley cytosol 43.68 42.23
AT3G48150.1 Thale cress cytosol 14.84 18.65
Protein Annotations
Gene3D:1.25.40.10MapMan:13.3.4.1.1.2.1EntrezGene:820879UniProt:A0A2H1ZEI2ProteinID:AEE75797.2ArrayExpress:AT3G16320
EnsemblPlantsGene:AT3G16320RefSeq:AT3G16320TAIR:AT3G16320RefSeq:AT3G16320-TAIR-GEnsemblPlants:AT3G16320.1TAIR:AT3G16320.1
Symbol:CDC27aGO:GO:0003674GO:GO:0005488GO:GO:0005515InterPro:IPR011990InterPro:IPR013026
InterPro:IPR019734RefSeq:NP_001319567.1PFAM:PF00515PFAM:PF07719PFAM:PF12895PO:PO:0000037
PO:PO:0000084PO:PO:0000293PO:PO:0001016PO:PO:0001017PO:PO:0001078PO:PO:0001081
PO:PO:0001185PO:PO:0004507PO:PO:0007611PO:PO:0007616PO:PO:0009005PO:PO:0009009
PO:PO:0009010PO:PO:0009031PO:PO:0009046PO:PO:0025195PO:PO:0025281PFscan:PS50005
PFscan:PS50293PANTHER:PTHR12558PANTHER:PTHR12558:SF13SMART:SM00028SUPFAM:SSF48452InterPro:TPR-contain_dom
InterPro:TPR-like_helical_dom_sfInterPro:TPR_1InterPro:TPR_2InterPro:TPR_repeatUniParc:UPI0000036B7ASEG:seg
Description
CDC27aTetratricopeptide repeat (TPR)-like superfamily protein [Source:TAIR;Acc:AT3G16320]
Coordinates
chr3:+:5529313..5534734
Molecular Weight (calculated)
82284.0 Da
IEP (calculated)
6.213
GRAVY (calculated)
-0.369
Length
728 amino acids
Sequence
(BLAST)
001: MMENLLANCV QKNLNHFMFT NAIFLCELLL AQFPSEVNLQ LLARCYLSNS QAYSAYYILK GSKTPQSRYL FAFSCFKLDL LGEAEAALLP CEDYAEEVPG
101: GAAGHYLLGL IYRYSGRKNC SIQQFRMALS FDPLCWEAYG ELCSLGAAEE ASTVFGNVAS QRLQKTCVEQ RISFSEGATI DQITDSDKAL KDTGLSQTEH
201: IPGENQQDLK IMQQPGDIPP NTDRQLSTNG WDLNTPSPVL LQVMDALPPL LLKNMRRPAV EGSLMSVHGV RVRRRNFFSE ELSAEAQEES GRRRSARIAA
301: RKKNPMSQSF GKDSHWLHLS PSESNYAPSL SSMIGKCRIQ SSKEVIPDTV TLNDPATTSG QSVSDIGSSV DDEEKSNPSE SSPDRFSLIS GISEVLSLLK
401: ILGDGHRHLH MYKCQEALLA YQKLSQKQYN THWVLMQVGK AYFELQDYFN ADSSFTLAHQ KYPYALEGMD TYSTVLYHLK EEMRLGYLAQ ELISVDRLSP
501: ESWCAVGNCY SLRKDHDTAL KMFQRAIQLN ERFTYAHTLC GHEFAALEEF EDAERCYRKA LGIDTRHYNA WYGLGMTYLR QEKFEFAQHQ FQLALQINPR
601: SSVIMCYYGI ALHESKRNDE ALMMMEKAVL TDAKNPLPKY YKAHILTSLG DYHKAQKVLE ELKECAPQES SVHASLGKIY NQLKQYDKAV LHFGIALDLS
701: PSPSDAVKIK AYMERLILPD ELVTEENL
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.