Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- extracellular 2
- endoplasmic reticulum 3
- vacuole 2
- plasma membrane 2
- golgi 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400083452 | Potato | cytosol | 14.75 | 86.49 |
| PGSC0003DMT400006585 | Potato | cytosol | 85.1 | 72.32 |
| Os06t0622500-00 | Rice | cytosol | 36.71 | 62.89 |
| GSMUA_Achr1P19740_001 | Banana | cytosol | 54.84 | 47.47 |
| Zm00001d042523_P001 | Maize | cytosol | 48.54 | 42.08 |
| KXG33895 | Sorghum | cytosol | 48.23 | 41.64 |
| TraesCS7A01G398600.1 | Wheat | cytosol | 48.08 | 41.29 |
| TraesCS7D01G392900.2 | Wheat | cytosol | 48.08 | 41.29 |
| TraesCS7B01G299300.1 | Wheat | cytosol, mitochondrion | 45.78 | 41.27 |
| HORVU7Hr1G093620.9 | Barley | cytosol | 47.16 | 40.77 |
| Solyc03g113740.2.1 | Tomato | cytosol, mitochondrion | 15.98 | 18.06 |
| Solyc03g061590.2.1 | Tomato | cytosol | 3.38 | 12.15 |
Protein Annotations
| Gene3D:1.25.40.10 | MapMan:13.3.4.1.1.2.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | InterPro:IPR011990 |
| InterPro:IPR013026 | InterPro:IPR019734 | UniProt:K4BH08 | PFAM:PF00515 | PFAM:PF13432 | PFscan:PS50005 |
| PFscan:PS50293 | PANTHER:PTHR12558 | PANTHER:PTHR12558:SF13 | SMART:SM00028 | SUPFAM:SSF48452 | EnsemblPlantsGene:Solyc03g061600.2 |
| EnsemblPlants:Solyc03g061600.2.1 | InterPro:TPR-contain_dom | InterPro:TPR-like_helical_dom_sf | InterPro:TPR_1 | InterPro:TPR_repeat | UniParc:UPI00027690BE |
| SEG:seg | : | : | : | : | : |
Description
Cell division cycle protein 27 homolog B [Source:Projected from Arabidopsis thaliana (AT2G20000) UniProtKB/Swiss-Prot;Acc:Q8LGU6]
Coordinates
chr3:+:30461661..30470524
Molecular Weight (calculated)
72241.1 Da
IEP (calculated)
6.474
GRAVY (calculated)
-0.389
Length
651 amino acids
Sequence
(BLAST)
(BLAST)
001: MTEHTFTFFP NNISCYFLLH EGYIDSHCYL VMILYFASLL LDDIPGAAEE AAAVFGEASL LCIQKQHIDQ GNQSQNLQAS TDDQNVASKN IVSDDISPRQ
101: SKHTHSNNLR EISGNYNGAA AIQNLGGVST NMSFYNTPSP MASQLSGVVP PPVCRNFQQN GTNASVAGAD NSPRSTVNST IQAPRRKFVD EGKLRKISGR
201: LFSDSGPRRN SRLSGESTGN TNSNVSAASG NGTIHSSKYY GSSKLSSMTL RSMTSRKTQS WAAENYGEGT RNDISDDSRL NMTLSHPSGD ARPLEQEGPG
301: TSASGVNVSS TSILSGASDI LSLFRILGEG YRLSCLYRCQ DALDVYNKLP HKHYHTGWVL SQIGRAYFEM VDYQEADHAF GLARLASPYS LEGMDLYSTV
401: LFHLKEDMKL SYLAQELVST DRLVPQSWCA MGNCYSLQKD HETALKNFQR AVQLNPRFAY GHTLCGHEYV ALEDFENAIK SYQSALRVDA RHYNAWYGLG
501: MIYLRQEKFE FSEHHFRMAL GINPQSSVIM SYLGTALHAL KKNEEALEVM ELAIVADKKN PLPMYQKANI LVSTESFDAA LEVLEELKEH APRESSVYAL
601: MGRIYKRRNM YDKAMLHFGV ALDLKPSATD VATIKAAIEK LHVPDEMEDE L
101: SKHTHSNNLR EISGNYNGAA AIQNLGGVST NMSFYNTPSP MASQLSGVVP PPVCRNFQQN GTNASVAGAD NSPRSTVNST IQAPRRKFVD EGKLRKISGR
201: LFSDSGPRRN SRLSGESTGN TNSNVSAASG NGTIHSSKYY GSSKLSSMTL RSMTSRKTQS WAAENYGEGT RNDISDDSRL NMTLSHPSGD ARPLEQEGPG
301: TSASGVNVSS TSILSGASDI LSLFRILGEG YRLSCLYRCQ DALDVYNKLP HKHYHTGWVL SQIGRAYFEM VDYQEADHAF GLARLASPYS LEGMDLYSTV
401: LFHLKEDMKL SYLAQELVST DRLVPQSWCA MGNCYSLQKD HETALKNFQR AVQLNPRFAY GHTLCGHEYV ALEDFENAIK SYQSALRVDA RHYNAWYGLG
501: MIYLRQEKFE FSEHHFRMAL GINPQSSVIM SYLGTALHAL KKNEEALEVM ELAIVADKKN PLPMYQKANI LVSTESFDAA LEVLEELKEH APRESSVYAL
601: MGRIYKRRNM YDKAMLHFGV ALDLKPSATD VATIKAAIEK LHVPDEMEDE L
001: MEAMLVDCVN NSLRHFVYKN AIFMCERLCA EFPSEVNLQL LATSYLQNNQ AYSAYHLLKG TQMAQSRYLF ALSCFQMDLL NEAESALCPV NEPGAEIPNG
101: AAGHYLLGLI YKYTDRRKNA AQQFKQSLTI DPLLWAAYEE LCILGAAEEA TAVFGETAAL SIQKQYMQQL STSLGLNTYN EERNSTSTKN TSSEDYSPRQ
201: SKHTQSHGLK DISGNFHSHG VNGGVSNMSF YNTPSPVAAQ LSGIAPPPLF RNFQPAVANP NSLITDSSPK STVNSTLQAP RRKFVDEGKL RKISGRLFSD
301: SGPRRSSRLS ADSGANINSS VATVSGNVNN ASKYLGGSKL SSLALRSVTL RKGHSWANEN MDEGVRGEPF DDSRPNTAST TGSMASNDQE DETMSIGGIA
401: MSSQTITIGV SEILNLLRTL GEGCRLSYMY RCQEALDTYM KLPHKHYNTG WVLSQVGKAY FELIDYLEAE KAFRLARLAS PYCLEGMDIY STVLYHLKED
501: MKLSYLAQEL ISTDRLAPQS WCAMGNCYSL QKDHETALKN FLRAVQLNPR FAYAHTLCGH EYTTLEDFEN GMKSYQNALR VDTRHYNAWY GLGMIYLRQE
601: KLEFSEHHFR MAFLINPSSS VIMSYLGTSL HALKRSEEAL EIMEQAIVAD RKNPLPMYQK ANILVCLERL DEALEVLEEL KEYAPSESSV YALMGRIYKR
701: RNMHDKAMLH FGLALDMKPP ATDVAAIKAA MEKLHVPDEI DESP
101: AAGHYLLGLI YKYTDRRKNA AQQFKQSLTI DPLLWAAYEE LCILGAAEEA TAVFGETAAL SIQKQYMQQL STSLGLNTYN EERNSTSTKN TSSEDYSPRQ
201: SKHTQSHGLK DISGNFHSHG VNGGVSNMSF YNTPSPVAAQ LSGIAPPPLF RNFQPAVANP NSLITDSSPK STVNSTLQAP RRKFVDEGKL RKISGRLFSD
301: SGPRRSSRLS ADSGANINSS VATVSGNVNN ASKYLGGSKL SSLALRSVTL RKGHSWANEN MDEGVRGEPF DDSRPNTAST TGSMASNDQE DETMSIGGIA
401: MSSQTITIGV SEILNLLRTL GEGCRLSYMY RCQEALDTYM KLPHKHYNTG WVLSQVGKAY FELIDYLEAE KAFRLARLAS PYCLEGMDIY STVLYHLKED
501: MKLSYLAQEL ISTDRLAPQS WCAMGNCYSL QKDHETALKN FLRAVQLNPR FAYAHTLCGH EYTTLEDFEN GMKSYQNALR VDTRHYNAWY GLGMIYLRQE
601: KLEFSEHHFR MAFLINPSSS VIMSYLGTSL HALKRSEEAL EIMEQAIVAD RKNPLPMYQK ANILVCLERL DEALEVLEEL KEYAPSESSV YALMGRIYKR
701: RNMHDKAMLH FGLALDMKPP ATDVAAIKAA MEKLHVPDEI DESP
Arabidopsis Description
CDC27BCell division cycle protein 27 homolog B [Source:UniProtKB/Swiss-Prot;Acc:Q8LGU6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.