Factsheet for Bra012635.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra002038.1-P
Bra002594.1-P
Bra002766.1-P
Bra010441.1-P
Bra012113.1-P
Bra012604.1-P
Bra012635.1-P
Bra013262.1-P
Bra013297.1-P
Bra013945.1-P
Bra016034.1-P
Bra019121.1-P
Bra021032.1-P
Bra034845.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G17870.1	Bra016034.1-P	AT1G72770.1	19407142
AT4G17870.1	Bra016034.1-P	AT1G72770.1	19624469
AT4G17870.1	Bra016034.1-P	AT1G72770.1	21847091
AT4G17870.1	Bra002038.1-P	AT3G11410.1	19407142
AT4G17870.1	Bra034845.1-P	AT3G11410.1	19407142
AT4G17870.1	Bra012635.1-P	AT4G17870.1	21847091
AT4G17870.1	Bra013262.1-P	AT4G17870.1	21847091
AT4G17870.1	Bra021032.1-P	AT4G17870.1	21847091
AT4G17870.1	Bra012604.1-P	AT4G18340.1	19407142
AT4G17870.1	Bra013297.1-P	AT4G18340.1	19407142
AT4G17870.1	Bra010441.1-P	AT4G26080.1	19407142
AT4G17870.1	Bra013945.1-P	AT4G26080.1	19407142
AT4G17870.1	Bra019121.1-P	AT4G26080.1	19407142
AT4G17870.1	Bra010441.1-P	AT4G26080.1	19874541
AT4G17870.1	Bra013945.1-P	AT4G26080.1	19874541
AT4G17870.1	Bra019121.1-P	AT4G26080.1	19874541
AT4G17870.1	Bra002766.1-P	AT5G57050.1	19407142
AT4G17870.1	Bra002594.1-P	AT5G59220.1	19407142
AT4G17870.1	Bra012113.1-P	AT5G66880.1	19874541

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX90440	Canola	cytosol	100.0	100.0
CDY01498	Canola	cytosol	99.48	99.48
AT4G17870.1	Thale cress	cytosol	91.62	91.62
Bra013262.1-P	Field mustard	cytosol	91.1	91.1
Bra021032.1-P	Field mustard	cytosol	73.82	89.81
Bra024995.1-P	Field mustard	nucleus	76.44	69.52
Bra017526.1-P	Field mustard	nucleus	61.26	63.93
PGSC0003DMT400005378	Potato	nucleus	70.68	63.38
Solyc06g061180.1.1	Tomato	nucleus	69.63	62.44
KRH45453	Soybean	cytosol	65.97	59.43
GSMUA_Achr4P19170_001	Banana	cytosol	59.69	58.76
KRH75621	Soybean	cytosol	64.92	57.94
GSMUA_Achr8P14780_001	Banana	cytosol	61.78	57.28
VIT_02s0012g01270.t01	Wine grape	cytosol	76.96	55.68
Zm00001d047037_P001	Maize	cytosol	58.12	54.15
Bra007772.1-P	Field mustard	cytosol	52.88	53.72
TraesCS1A01G191700.1	Wheat	cytosol	59.16	53.55
Zm00001d030045_P001	Maize	cytosol	59.16	53.3
TraesCS1D01G195300.1	Wheat	cytosol	59.16	53.05
Bra028758.1-P	Field mustard	cytosol	45.55	52.73
TraesCS1B01G206600.1	Wheat	cytosol, unclear	58.64	52.58
Os10t0573400-01	Rice	plasma membrane	58.12	52.36
OQU92088	Sorghum	cytosol	57.59	51.89
Bra017125.1-P	Field mustard	plastid	49.74	46.57
Bra005115.1-P	Field mustard	plastid	36.13	46.31
Bra025048.1-P	Field mustard	cytosol	40.84	45.88
Bra000052.1-P	Field mustard	plastid	48.69	44.93
Bra013334.1-P	Field mustard	cytosol	38.74	44.58
Bra008064.1-P	Field mustard	plastid	47.64	44.39
Bra033267.1-P	Field mustard	cytosol	41.88	43.01
Bra003077.1-P	Field mustard	cytosol	40.84	42.39
Bra003463.1-P	Field mustard	cytosol	41.36	42.25
Bra005853.1-P	Field mustard	cytosol	44.5	41.87
Bra009113.1-P	Field mustard	cytosol	44.5	41.67
Bra000938.1-P	Field mustard	cytosol	41.88	41.45
Bra029093.1-P	Field mustard	cytosol	39.79	41.3
HORVU1Hr1G050110.1	Barley	plastid	58.64	40.88
Bra026299.1-P	Field mustard	cytosol	39.27	40.76
Bra017012.1-P	Field mustard	cytosol	42.93	40.0
Bra022634.1-P	Field mustard	cytosol	39.27	39.89
Bra004967.1-P	Field mustard	mitochondrion	41.36	37.26
Bra000184.1-P	Field mustard	cytosol, mitochondrion	40.31	36.32
VIT_04s0008g00270.t01	Wine grape	cytosol	37.17	24.48
VIT_08s0058g00230.t01	Wine grape	plastid	36.65	21.74
VIT_13s0175g00110.t01	Wine grape	plastid	6.81	12.26

Protein Annotations

EnsemblPlants:Bra012635.1	EnsemblPlants:Bra012635.1-P	EnsemblPlantsGene:Bra012635	Gene3D:3.30.530.20	InterPro:IPR023393	InterPro:Polyketide_cyclase/dehydratase
InterPro:START-like_dom_sf	PANTHER:PTHR31213	PANTHER:PTHR31213:SF6	PFAM:PF10604	SUPFAM:SSF55961	UniParc:UPI0002540A08
UniProt:M4D825	MapMan:11.1.2.1.1.1	:	:	:	:

Description

AT4G17870 (E=6e-099) | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Streptomyces cyclase/dehydrase (InterPro:IPR005031); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G46790.1); Has 177 Blast hits to 177 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 177; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

Coordinates

chrA03:+:23020837..23021412

Molecular Weight (calculated)

21369.3 Da

IEP (calculated)

6.396

GRAVY (calculated)

-0.399

Length

191 amino acids

Sequence
(BLAST)

001: MPSQLTPEER SELAQSIAEF HTYHLGPGSC SSLHAQRIHA PPEIVWSVVR RFDKPQTYKH FIKSCSVEDG FEMRVGCTRA VNVISGLPAN TSTERLDILD
101: DERRVTGFSI IGGEHRLTNY KSVTTVHRFE KERRIWTVVL ESYVVDMPEG NSEDDTRMFA DTVVKLNLQK LATVTEAMAR SAGDGSGAQV T

Best Arabidopsis Sequence Match ( AT4G17870.1 )
(BLAST)

001: MPSELTPEER SELKNSIAEF HTYQLDPGSC SSLHAQRIHA PPELVWSIVR RFDKPQTYKH FIKSCSVEQN FEMRVGCTRD VIVISGLPAN TSTERLDILD
101: DERRVTGFSI IGGEHRLTNY KSVTTVHRFE KENRIWTVVL ESYVVDMPEG NSEDDTRMFA DTVVKLNLQK LATVAEAMAR NSGDGSGSQV T

Arabidopsis Description

PYR1Abscisic acid receptor PYR1 [Source:UniProtKB/Swiss-Prot;Acc:O49686]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.