Factsheet for VIT_04s0008g00270.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
extracellular 1
plastid 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_02s0012g01270.t01
VIT_04s0008g00270.t01
VIT_06s0004g05460.t01
VIT_07s0197g00080.t01
VIT_08s0058g00230.t01
VIT_09s0002g01850.t01
VIT_13s0019g02200.t01
VIT_13s0175g00110.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G17870.1	VIT_09s0002g01850.t01	AT1G72770.1	19407142
AT4G17870.1	VIT_09s0002g01850.t01	AT1G72770.1	19624469
AT4G17870.1	VIT_09s0002g01850.t01	AT1G72770.1	21847091
AT4G17870.1	VIT_13s0019g02200.t01	AT3G11410.1	19407142
AT4G17870.1	VIT_02s0012g01270.t01	AT4G17870.1	21847091
AT4G17870.1	VIT_04s0008g00270.t01	AT4G17870.1	21847091
AT4G17870.1	VIT_08s0058g00230.t01	AT4G17870.1	21847091
AT4G17870.1	VIT_13s0175g00110.t01	AT4G17870.1	21847091
AT4G17870.1	VIT_06s0004g05460.t01	AT5G59220.1	19407142
AT4G17870.1	VIT_07s0197g00080.t01	AT5G66880.1	19874541
AT5G46790.1	VIT_09s0002g01850.t01	AT1G72770.1	19407142
AT5G46790.1	VIT_09s0002g01850.t01	AT1G72770.1	21847091
AT5G46790.1	VIT_13s0019g02200.t01	AT3G11410.1	19407142
AT5G46790.1	VIT_02s0012g01270.t01	AT5G46790.1	21847091
AT5G46790.1	VIT_04s0008g00270.t01	AT5G46790.1	21847091
AT5G46790.1	VIT_08s0058g00230.t01	AT5G46790.1	21847091
AT5G46790.1	VIT_13s0175g00110.t01	AT5G46790.1	21847091

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_08s0058g00230.t01	Wine grape	plastid	45.52	40.99
Bra012635.1-P	Field mustard	cytosol	24.48	37.17
CDY01498	Canola	cytosol	24.48	37.17
CDX90440	Canola	cytosol	24.48	37.17
CDY08877	Canola	cytosol	19.31	36.13
AT4G17870.1	Thale cress	cytosol	23.79	36.13
CDY70860	Canola	cytosol	23.1	36.02
Bra013262.1-P	Field mustard	cytosol	23.45	35.6
CDY69797	Canola	cytosol	23.45	35.6
Bra021032.1-P	Field mustard	cytosol	18.97	35.03
CDX76554	Canola	cytosol	18.62	34.84
Bra024995.1-P	Field mustard	nucleus	23.1	31.9
CDY58505	Canola	nucleus	23.1	31.9
CDX77691	Canola	nucleus	23.1	31.16
Zm00001d047037_P001	Maize	cytosol	21.72	30.73
Os10t0573400-01	Rice	plasma membrane	22.41	30.66
GSMUA_Achr8P14780_001	Banana	cytosol	21.72	30.58
Solyc06g061180.1.1	Tomato	nucleus	22.07	30.05
VIT_02s0012g01270.t01	Wine grape	cytosol	27.24	29.92
GSMUA_Achr4P19170_001	Banana	cytosol	20.0	29.9
AT5G46790.1	Thale cress	nucleus	22.76	29.86
KRH45453	Soybean	cytosol	21.72	29.72
PGSC0003DMT400005378	Potato	nucleus	21.72	29.58
KRH75621	Soybean	cytosol	21.72	29.44
VIT_16s0050g02620.t01	Wine grape	cytosol	18.62	29.19
OQU92088	Sorghum	cytosol	21.03	28.77
VIT_02s0025g01340.t01	Wine grape	cytosol	17.93	28.11
Zm00001d030045_P001	Maize	cytosol	20.34	27.83
CDY03194	Canola	nucleus	18.28	27.75
CDY68316	Canola	nucleus	17.93	27.23
VIT_13s0067g01940.t01	Wine grape	plastid	19.66	26.89
TraesCS1A01G191700.1	Wheat	cytosol	19.31	26.54
VIT_04s0008g00890.t01	Wine grape	cytosol	16.9	26.49
TraesCS1B01G206600.1	Wheat	cytosol, unclear	19.31	26.29
TraesCS1D01G195300.1	Wheat	cytosol	19.31	26.29
VIT_15s0046g01050.t01	Wine grape	cytosol	17.24	26.04
Bra017526.1-P	Field mustard	nucleus	16.21	25.68
VIT_08s0058g00470.t01	Wine grape	plastid	20.0	25.55
VIT_13s0175g00110.t01	Wine grape	plastid	9.31	25.47
HORVU1Hr1G050110.1	Barley	plastid	18.97	20.07

Protein Annotations

MapMan:11.1.2.1.1.1	Gene3D:2.40.30.10	Gene3D:3.30.530.20	ProteinID:CCB46519	ProteinID:CCB46519.1	UniProt:F6H363
EMBL:FN595231	GO:GO:0003674	GO:GO:0003824	GO:GO:0004252	GO:GO:0006508	GO:GO:0008150
GO:GO:0008152	GO:GO:0016787	GO:GO:0019538	InterPro:IPR023393	PANTHER:PTHR31213	PANTHER:PTHR31213:SF6
SUPFAM:SSF50447	SUPFAM:SSF55961	InterPro:START-like_dom_sf	InterPro:Transl_B-barrel_sf	UniParc:UPI0002108CBF	ArrayExpress:VIT_04s0008g00270
EnsemblPlantsGene:VIT_04s0008g00270	EnsemblPlants:VIT_04s0008g00270.t01	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr4:-:185877..188582

Molecular Weight (calculated)

32282.4 Da

IEP (calculated)

8.146

GRAVY (calculated)

-0.216

Length

290 amino acids

Sequence
(BLAST)

001: MPGQWEYQVD PGQCSSLLAQ RVHVPLFNVC SVVHRFGKPQ TCKHVIKSCH MEGGFEMRMG CLRDVNVISG LPAATSAGRL DIQDDERHVT RSAFPTWQDV
101: LAADSKSIEN AIRRGGLAVT EVSCIKKMLN CLLGRKCKLC LGYLCDLTVD EIKADAMTKG CTACLAPSEL RSPIPASSTC DHTALLMIER TTNLDWYKDP
201: TLLEALDRIH EPKRLMDKPP HLPLQDVYKI GGIGTIPVGR VETGIIKLHD PARKLPTSQP GHYRESPWPN WKWLCPSPWL LHLSHCGKVC

Best Arabidopsis Sequence Match ( AT4G17870.1 )
(BLAST)

001: MPSELTPEER SELKNSIAEF HTYQLDPGSC SSLHAQRIHA PPELVWSIVR RFDKPQTYKH FIKSCSVEQN FEMRVGCTRD VIVISGLPAN TSTERLDILD
101: DERRVTGFSI IGGEHRLTNY KSVTTVHRFE KENRIWTVVL ESYVVDMPEG NSEDDTRMFA DTVVKLNLQK LATVAEAMAR NSGDGSGSQV T

Arabidopsis Description

PYR1Abscisic acid receptor PYR1 [Source:UniProtKB/Swiss-Prot;Acc:O49686]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.