Factsheet for Solyc10g085310.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
plastid 3
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

plastid: 20363867

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g070450.1.1
Solyc03g096670.2.1
Solyc05g052980.2.1
Solyc06g076400.2.1
Solyc07g040990.2.1
Solyc08g062650.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G38310.1	Solyc08g062650.2.1	AT1G72770.1	19407142
AT2G38310.1	Solyc08g062650.2.1	AT1G72770.1	19624469
AT2G38310.1	Solyc03g096670.2.1	AT3G11410.1	19407142
AT2G38310.1	Solyc05g052980.2.1	AT3G11410.1	19407142
AT2G38310.1	Solyc02g070450.1.1	AT4G18340.1	19407142
AT2G38310.1	Solyc07g040990.2.1	AT4G26080.1	19407142
AT2G38310.1	Solyc06g076400.2.1	AT5G59220.1	19407142

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400028658	Potato	nucleus	97.18	97.18
Solyc09g015380.1.1	Tomato	plastid	69.95	74.13
Solyc10g076410.1.1	Tomato	plastid	70.42	73.89
KRH00319	Soybean	cytosol	61.03	73.45
KRH49452	Soybean	plastid	59.62	71.35
Solyc03g095780.1.1	Tomato	plastid	64.79	68.66
VIT_08s0058g00470.t01	Wine grape	plastid	71.36	66.96
KRH76014	Soybean	cytosol	67.61	66.67
Bra017125.1-P	Field mustard	plastid	62.44	65.2
CDY18391	Canola	plastid	62.44	65.2
CDY54415	Canola	cytosol	62.44	65.2
AT2G38310.1	Thale cress	plastid	62.91	64.73
VIT_13s0067g01940.t01	Wine grape	plastid	63.85	64.15
CDX91449	Canola	plastid	61.5	63.28
CDY54453	Canola	plastid	61.5	62.98
Bra000052.1-P	Field mustard	plastid	61.03	62.8
CDY07739	Canola	plastid	61.03	62.8
TraesCS4A01G114400.1	Wheat	cytosol	52.58	62.57
Bra005115.1-P	Field mustard	plastid	43.66	62.42
CDY14471	Canola	plastid	60.56	62.32
Solyc05g052420.1.1	Tomato	cytosol	23.0	59.76
GSMUA_Achr9P04600_001	Banana	cytosol	39.91	59.44
TraesCS1B01G306800.1	Wheat	mitochondrion	53.99	59.28
GSMUA_Achr6P32790_001	Banana	cytosol	58.69	59.24
TraesCS1A01G297600.1	Wheat	mitochondrion	55.4	58.71
Zm00001d038436_P001	Maize	plastid	54.93	58.5
Solyc08g065410.1.1	Tomato	cytosol	39.91	58.22
TraesCS1D01G293600.1	Wheat	mitochondrion, plastid	54.93	58.21
HORVU1Hr1G070420.1	Barley	mitochondrion	54.46	57.71
TraesCS2D01G087500.1	Wheat	plastid	57.28	57.01
TraesCS3D01G342000.1	Wheat	plastid	54.93	56.8
TraesCS3A01G348400.1	Wheat	plastid	54.93	56.8
TraesCS2B01G105300.1	Wheat	plastid	57.75	56.68
TraesCS3B01G380300.1	Wheat	mitochondrion, plastid	54.93	56.52
HORVU3Hr1G088100.1	Barley	plastid	54.46	56.31
HORVU3Hr1G039010.1	Barley	plastid	54.46	56.31
GSMUA_Achr5P29490_001	Banana	plastid	42.72	56.17
GSMUA_Achr11P...	Banana	cytosol, plastid	40.85	55.06
EES19683	Sorghum	plastid	55.4	54.63
GSMUA_AchrUn_...	Banana	plastid	40.38	54.43
GSMUA_Achr9P17980_001	Banana	cytosol	38.03	54.36
Zm00001d047705_P001	Maize	plastid	55.4	54.13
Os05t0473000-01	Rice	cytosol	54.93	53.92
EER92405	Sorghum	plastid	55.4	53.15
Zm00001d028793_P001	Maize	cytosol, mitochondrion, plastid	54.46	52.73
TraesCS4D01G191200.1	Wheat	cytosol	54.93	52.23
TraesCS4B01G189800.1	Wheat	cytosol	54.93	52.23
Os03t0297600-01	Rice	cytosol	55.87	51.97
HORVU4Hr1G055220.1	Barley	cytosol	54.46	51.79
Zm00001d043014_P001	Maize	cytosol	51.64	51.64
Solyc06g050500.2.1	Tomato	plastid	65.73	50.91
GSMUA_Achr8P21220_001	Banana	cytosol	40.38	50.59
Solyc12g095970.1.1	Tomato	cytosol	44.13	49.47
Solyc12g055990.1.1	Tomato	cytosol	40.38	47.51
Solyc01g095700.2.1	Tomato	cytosol	41.31	47.31
Solyc03g007310.2.1	Tomato	cytosol	40.85	47.03
Os01t0827800-00	Rice	plastid	54.46	45.31
Solyc08g082180.2.1	Tomato	cytosol	39.91	44.97
Solyc06g061180.1.1	Tomato	nucleus	44.6	44.6
GSMUA_Achr10P...	Banana	cytosol, plastid	41.31	44.44
Solyc08g076960.1.1	Tomato	extracellular	46.48	42.86
TraesCS2A01G089400.1	Wheat	plastid	56.81	42.31
OQU87775	Sorghum	endoplasmic reticulum, extracellular	50.7	39.71
Solyc02g076770.1.1	Tomato	cytosol	38.03	37.16
Zm00001d012475_P001	Maize	cytosol	52.58	35.9

Protein Annotations

EnsemblPlants:Solyc10g085310.1.1	EnsemblPlantsGene:Solyc10g085310.1	Gene3D:3.30.530.20	InterPro:IPR023393	InterPro:Polyketide_cyclase/dehydratase	InterPro:START-like_dom_sf
PANTHER:PTHR31213	PANTHER:PTHR31213:SF48	PFAM:PF10604	SUPFAM:SSF55961	UniParc:UPI000276A723	UniProt:K4D3W5
MapMan:11.1.2.1.1.1	:	:	:	:	:

Description

No Description!

Coordinates

chr10:+:64533746..64534387

Molecular Weight (calculated)

23400.4 Da

IEP (calculated)

6.667

GRAVY (calculated)

-0.291

Length

213 amino acids

Sequence
(BLAST)

001: MPPSSSDSSV LLQRISSNNT HDFAYKQSHH QLQRRMPIPC STEVPDSVSR YHTHTVSPDQ CCSAVIQRIS APVSTVWSVV RRFDNPQAYK HFVKSCHVVV
101: GDGDVGTLRE VRVISGLPAA SSTERLEILD DERHVISFSV VGGDHKLANY RSVTTLHTEP SSGNEAAAET IVVESYVVDV PPGNTREETC VFVDTIVKCN
201: LQSLSQIAQN SAR

Best Arabidopsis Sequence Match ( AT2G38310.1 )
(BLAST)

001: MLAVHRPSSA VSDGDSVQIP MMIASFQKRF PSLSRDSTAA RFHTHEVGPN QCCSAVIQEI SAPISTVWSV VRRFDNPQAY KHFLKSCSVI GGDGDNVGSL
101: RQVHVVSGLP AASSTERLDI LDDERHVISF SVVGGDHRLS NYRSVTTLHP SPISGTVVVE SYVVDVPPGN TKEETCDFVD VIVRCNLQSL AKIAENTAAE
201: SKKKMSL

Arabidopsis Description

PYL4Abscisic acid receptor PYL4 [Source:UniProtKB/Swiss-Prot;Acc:O80920]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.