Factsheet for PGSC0003DMT400019210

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g008500.1.1	Tomato	cytosol, nucleus	98.61	98.61
VIT_13s0064g00730.t01	Wine grape	cytosol	83.06	82.83
Bra003429.1-P	Field mustard	cytosol	79.17	79.17
CDY56730	Canola	cytosol	79.17	79.17
CDX67843	Canola	cytosol	78.89	78.89
KRH23861	Soybean	cytosol, nucleus	78.61	78.39
KRH32953	Soybean	cytosol	78.61	78.39
KRH39934	Soybean	cytosol	71.67	78.18
AT3G60830.1	Thale cress	cytosol	78.61	77.96
CDX71774	Canola	cytosol	77.22	77.87
KRH13968	Soybean	cytosol, nucleus	77.78	77.56
CDY62715	Canola	cytosol	77.5	76.86
VIT_00s0214g00170.t01	Wine grape	cytosol	36.67	75.43
EER91551	Sorghum	cytosol	74.72	74.72
Os03t0783000-01	Rice	cytosol, nucleus	73.89	73.89
GSMUA_AchrUn_...	Banana	endoplasmic reticulum	58.33	72.16
TraesCS5A01G420600.1	Wheat	cytosol, nucleus	71.39	70.99
TraesCS5D01G429200.1	Wheat	cytosol	71.39	70.99
TraesCS5B01G422700.1	Wheat	cytosol	71.11	70.72
CDY52344	Canola	cytosol	77.78	69.48
Bra007566.1-P	Field mustard	cytosol	59.72	65.55
Zm00001d014112_P003	Maize	cytosol	73.61	64.16
HORVU5Hr1G102220.2	Barley	plastid	71.39	58.68
PGSC0003DMT400087294	Potato	mitochondrion	30.0	39.42
PGSC0003DMT400049429	Potato	cytosol	40.28	38.46
PGSC0003DMT400077954	Potato	cytosol	40.28	38.46
PGSC0003DMT400060225	Potato	cytosol	40.0	38.2
PGSC0003DMT400060953	Potato	cytosol	40.0	38.2
PGSC0003DMT400071331	Potato	cytosol	40.0	38.2
PGSC0003DMT400001169	Potato	cytosol	40.0	38.1
PGSC0003DMT400076501	Potato	cytosol	21.11	38.0
PGSC0003DMT400010174	Potato	cytosol	39.44	37.67
PGSC0003DMT400047481	Potato	cytosol	39.44	37.67
PGSC0003DMT400023026	Potato	cytosol	39.17	37.4
PGSC0003DMT400076499	Potato	cytosol	17.78	33.16
PGSC0003DMT400074882	Potato	cytosol	31.11	30.27
PGSC0003DMT400022210	Potato	cytosol	30.83	30.16
PGSC0003DMT400088088	Potato	cytosol	16.11	29.9
PGSC0003DMT400022205	Potato	cytosol	29.72	29.23
PGSC0003DMT400074887	Potato	cytosol	29.44	28.65
PGSC0003DMT400027956	Potato	cytosol	28.89	24.13
PGSC0003DMT400052197	Potato	cytosol	26.67	24.06
PGSC0003DMT400056033	Potato	cytosol	28.61	23.68
PGSC0003DMT400038724	Potato	cytosol	26.39	21.69

Protein Annotations

EntrezGene:102598577	MapMan:12.4.2.4	Gene3D:3.30.420.40	Gene3D:3.90.640.10	InterPro:Actin	InterPro:Arp7_plant
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006325	GO:GO:0008150
GO:GO:0009987	GO:GO:0016043	GO:GO:0032502	UniProt:M1ABS0	PFAM:PF00022	EnsemblPlantsGene:PGSC0003DMG402007428
PGSC:PGSC0003DMG402007428	EnsemblPlants:PGSC0003DMT400019210	PRINTS:PR00190	PANTHER:PTHR11937	PANTHER:PTHR11937:SF257	SMART:SM00268
SUPFAM:SSF53067	UniParc:UPI00029662D4	RefSeq:XP_006361671.1	SEG:seg	:	:

Description

Actin [Source:PGSC_GENE;Acc:PGSC0003DMG402007428]

Coordinates

chr11:-:3545207..3553777

Molecular Weight (calculated)

39531.0 Da

IEP (calculated)

4.526

GRAVY (calculated)

-0.132

Length

360 amino acids

Sequence
(BLAST)

001: MEAVVVDAGS KLLKAGFAIP DQTPAMVIPT QMKRIPEDDE GSLFEEEEVA VDPIERGFVK DWDAMEDLLH HVLYSGLGWE IGNEGQILFT DPLCTPKAVR
101: EQLVQLMFET FNISGFYASE QAVLSLYAVG RISGCTVDVG HGKIDIAPVI EGAVQHIASR RLEVGGLDLT KLLADELSKS NPTVKLNISD VEKLKEQYAC
201: CADDDIAYEK LQHSCLEEKH TLPDGQVITI GKERYTVGEA LFQPSILGND THGIVEQLVH SISSVSSENH RQLLENTVLC GGTATLTGFE ERFQREATLC
301: SSAVRPSLVK PPEYMPENLT SYSAWIGGAI LAKVVFPQNQ HITKADYDES GPSVVHRKCF

Best Arabidopsis Sequence Match ( AT3G60830.1 )
(BLAST)

001: MEALVVDAGS KFLKAGAAIP DQSPAMIIPS QMKRMVDDGS SSADNPTTVF EDVTLDPIER GLIRDWDAME DLLRYVVYTG LGWEEGNEGN ILFTDPLCTP
101: KAIREQLVQL MFETFNVSGF YASEQAVLSL YAVGRISGCT VDIGHGKIDI APVLEGAVQH IASKRFELGG TELTKLFAQE LGKTNPSMNL SMSDVEKLKE
201: QYANCAEDEI AYKKTQNCEI EQHTLPDGQV ISIGRERYSV GEALFQPSIL GLEEHGIVEQ LVRIISTVSS ENHRQLLENT VLCGGTTSMT GFESRFQKEA
301: NLCSSAIRPT LVKPPEYMPE NLGMYSAWVG GAILAKVVFP QNQHVTKADY DETGPSVVHR KCF

Arabidopsis Description

ARP7Actin-related protein 7 [Source:UniProtKB/Swiss-Prot;Acc:Q8L4Y5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.