Factsheet for Bra020279.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
nucleus 3
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY09244	Canola	mitochondrion	94.55	100.0
AT3G46020.1	Thale cress	mitochondrion	69.09	74.51
Os01t0502800-01	Rice	mitochondrion	30.91	64.15
KRH23034	Soybean	mitochondrion	44.55	56.98
KRH10291	Soybean	nucleus	35.45	52.7
VIT_06s0004g04260.t01	Wine grape	mitochondrion	50.0	51.89
TraesCS4D01G205200.1	Wheat	mitochondrion	45.45	48.08
TraesCS4A01G100000.1	Wheat	mitochondrion	45.45	48.08
TraesCS4B01G204300.1	Wheat	mitochondrion	45.45	47.17
KXG36665	Sorghum	mitochondrion	42.73	44.76
GSMUA_Achr6P34250_001	Banana	mitochondrion	44.55	44.55
AT5G59860.1	Thale cress	nucleus	61.82	43.31
Bra028739.1-P	Field mustard	mitochondrion	39.09	29.45
Bra002976.1-P	Field mustard	mitochondrion	27.27	28.85
Bra013997.1-P	Field mustard	mitochondrion	34.55	26.21
Bra000516.1-P	Field mustard	mitochondrion	31.82	26.12
Bra037056.1-P	Field mustard	mitochondrion	35.45	26.0
Bra005189.1-P	Field mustard	plastid	33.64	25.69
Bra008100.1-P	Field mustard	cytosol	19.09	25.61
Bra025674.1-P	Field mustard	mitochondrion	30.91	23.45
Bra029020.1-P	Field mustard	plastid	31.82	22.88
Bra029692.1-P	Field mustard	mitochondrion	29.09	22.38
Bra001972.1-P	Field mustard	nucleus	29.09	19.51
Bra011869.1-P	Field mustard	cytosol	28.18	19.14
Bra010693.1-P	Field mustard	nucleus	28.18	18.79
Bra030284.1-P	Field mustard	nucleus	27.27	17.86
Bra031210.1-P	Field mustard	nucleus	27.27	17.86
Bra014000.1-P	Field mustard	mitochondrion	34.55	17.12
Bra008020.1-P	Field mustard	endoplasmic reticulum	27.27	14.42
Bra003841.1-P	Field mustard	cytosol, nucleus, plastid	31.82	13.62
Bra035944.1-P	Field mustard	plastid	30.91	12.93
Bra025205.1-P	Field mustard	nucleus	26.36	12.5
Bra008142.1-P	Field mustard	mitochondrion	30.0	12.5
Bra032933.1-P	Field mustard	nucleus	27.27	12.35
Bra015926.1-P	Field mustard	mitochondrion	30.0	11.58
Bra012986.1-P	Field mustard	mitochondrion	30.91	11.15
Bra031244.1-P	Field mustard	plastid	29.09	8.58
Bra005798.1-P	Field mustard	nucleus	23.64	8.5

Protein Annotations

EnsemblPlants:Bra020279.1	EnsemblPlants:Bra020279.1-P	EnsemblPlantsGene:Bra020279	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf
InterPro:RRM_dom	PANTHER:PTHR15241	PFAM:PF00076	PFscan:PS50102	SMART:SM00360	SUPFAM:SSF54928
UniParc:UPI00025435F5	UniProt:M4DUT6	MapMan:35.2	:	:	:

Description

AT3G46020 (E=2e-038) | RNA-binding protein, putative

Coordinates

chrA02:-:6003052..6003858

Molecular Weight (calculated)

12394.7 Da

IEP (calculated)

9.605

GRAVY (calculated)

-0.591

Length

110 amino acids

Sequence
(BLAST)

001: MAKRFTTQLF VSRLSGYTTD QSLRQLFSPF GQIKEARLIK DSQTQRPKGF GFVTFESEDD AQKAMKALDG KIVDGRLIFV EAAKDVEAPT TNMNSVTKLD
101: ENTHSHYKTS

Best Arabidopsis Sequence Match ( AT3G46020.1 )
(BLAST)

001: MAKRISAQLF VSRLSAYTTD QSLRQLFSPF GQIKEARLIR DSETQRPKGF GFITFDSEDD ARKALKSLDG KIVDGRLIFV EVAKNAEEVR AGINSNKAED
101: RG

Arabidopsis Description

At3g46020 [Source:UniProtKB/TrEMBL;Acc:Q9LZT1]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.