CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 6
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	nucleus
ChloroP:	plastid
EpiLoc:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
Plant-mPloc:	plastid
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH03133	Soybean	nucleus	20.62	50.55
KRH56813	Soybean	mitochondrion	20.33	50.0
KRH29451	Soybean	nucleus	12.46	49.12
Bra035944.1-P	Field mustard	plastid	18.99	48.67
CDY16825	Canola	plastid	18.99	48.67
Os12t0502200-01	Rice	mitochondrion	18.4	48.06
KRG97345	Soybean	mitochondrion	9.94	47.52
KRH51528	Soybean	nucleus	12.76	47.25
VIT_17s0000g07330.t01	Wine grape	plastid	19.14	46.57
AT5G61030.1	Thale cress	mitochondrion	20.92	45.63
Zm00001d041750_P001	Maize	mitochondrion	17.66	45.59
KRH29452	Soybean	nucleus	10.53	45.51
KRH60842	Soybean	mitochondrion	12.46	45.41
EES16016	Sorghum	mitochondrion	16.77	45.2
GSMUA_Achr4P03230_001	Banana	mitochondrion	17.06	44.92
TraesCS3D01G424100.1	Wheat	mitochondrion	14.54	44.75
Bra012986.1-P	Field mustard	mitochondrion	20.03	44.26
TraesCS3A01G428400.1	Wheat	mitochondrion	14.69	43.81
KRH29454	Soybean	nucleus	10.98	43.53
TraesCS3B01G465800.1	Wheat	mitochondrion	14.69	42.86
Os07t0602600-01	Rice	mitochondrion	14.84	42.02
GSMUA_Achr9P07090_001	Banana	mitochondrion	14.84	42.02
KRH29453	Soybean	nucleus	8.61	41.43
Zm00001d023734_P003	Maize	nucleus, plastid	17.36	40.77
KRH01278	Soybean	mitochondrion, nucleus, plastid	14.69	40.57
TraesCS5D01G473100.1	Wheat	mitochondrion	18.1	39.87
KRH31570	Soybean	mitochondrion	8.46	39.31
HORVU5Hr1G110370.1	Barley	mitochondrion	17.06	39.25
TraesCS5B01G470700.1	Wheat	mitochondrion	17.8	39.09
TraesCS2D01G184200.1	Wheat	mitochondrion	18.84	39.08
TraesCS5A01G460900.1	Wheat	mitochondrion	17.66	39.02
CDY02175	Canola	mitochondrion	19.58	38.94
CDX87197	Canola	plastid	18.99	38.91
TraesCS2B01G203200.1	Wheat	mitochondrion	18.4	38.87
KRH45033	Soybean	nucleus, plastid	14.1	38.78
Zm00001d022065_P001	Maize	mitochondrion	17.51	38.31
KXG36643	Sorghum	mitochondrion	17.66	37.66
Os10t0321700-01	Rice	mitochondrion	17.21	36.59
KRH42209	Soybean	endoplasmic reticulum	9.35	35.8
KRH58335	Soybean	nucleus	10.83	35.1
HORVU3Hr1G094330.2	Barley	mitochondrion	15.88	34.97
KRG90774	Soybean	nucleus	13.2	31.9
KRH17905	Soybean	cytosol, mitochondrion, nucleus	3.86	31.33
KRH67959	Soybean	mitochondrion	5.93	30.77
KRH50325	Soybean	vacuole	6.38	30.71
KRH67547	Soybean	mitochondrion	6.23	30.22
KRH10291	Soybean	nucleus	3.26	29.73
KRG95817	Soybean	mitochondrion	6.08	29.5
KRH23034	Soybean	mitochondrion	3.71	29.07
KRH35987	Soybean	nucleus	12.46	29.07
KRH27720	Soybean	endoplasmic reticulum, mitochondrion	4.01	27.84
KRH77758	Soybean	mitochondrion	4.3	25.66
KRH25927	Soybean	mitochondrion, plastid	5.19	24.14
KRH55574	Soybean	mitochondrion, plastid	4.9	22.76
KRH24829	Soybean	mitochondrion	4.45	20.55
KRH24832	Soybean	endoplasmic reticulum	4.15	19.86
KRH09475	Soybean	plastid	4.6	17.22
TraesCS2A01G176700.1	Wheat	mitochondrion	17.66	16.23
KRH38934	Soybean	plastid	3.26	14.29
KRH40931	Soybean	mitochondrion	4.45	12.99
KRG92035	Soybean	plastid	5.19	8.97

Protein Annotations

EntrezGene:100801928	MapMan:16.12.5.2	Gene3D:3.30.70.330	EMBL:ACUP02003566	EnsemblPlantsGene:GLYMA_06G203800	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	UniProt:K7KW68
EnsemblPlants:KRH54698	ProteinID:KRH54698	ProteinID:KRH54698.1	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102
PANTHER:PTHR44202	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI00029530AB
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr6:-:19089835..19093799

Molecular Weight (calculated)

66839.6 Da

IEP (calculated)

5.413

GRAVY (calculated)

-0.614

Length

674 amino acids

Sequence
(BLAST)

001: MWCAEYNFSV YVFSQVAGMA FFGRVGNILR QATNQKIGLE IRSLSSVFQA TRCMSNAPNS RLFIGGVSYS IDAQSLGEIC SQYGQVVDAR IIMDRETGRH
101: RGFGFITYSN VDEASRALQA LDGQDLDGRR VEVKFAIERS HGFGGGGFGG SYGNTPYDAG AGTGHPGSYG NTPYGAASGG YDNTGGGNAA GVYGRGEDGG
201: GGNWPSGNFG VSSFGNNYGD AGVYAGNSAG GYDNNGYGGG SGGDAGPYGS NAARDYDNGV GGSGSSFGDR SSGKNYGDAG AFRANAASEY GGGSGGSFGD
301: SSSVNNYGAG GGYNGTGTSY RNAGSFATSN PYNDGPGAAG FGKNNNYDSS AGFGSGSRYG SAAAAGGRQS FAGSQHPGSA MANASDGTDT GNGFAGGSYG
401: NAGSFATSKT YNDGTGAAGF GKNNKYDSSA GFGSSSRYDS AASVGSQSFA GKQHPGMVNG SDGTGTGNGF AGGSYGNAGS YATSNTDKDG TGAAGFGKNN
501: NYDSSAGFGS GSRYGSAAAG GRQCFAGSQH PGIAMANASD GTDTGNGFAG GSYGNAGSFA TCNSYNDGTG TAGFGKSNKY DSSAGFGSSS RYGSAAAVGS
601: QSFASSQHPG SAMANASNGT GTGNDFADRY HGSGGQFGSN QSSNVGQHGR DFGGSFDEDF RIGNYENDAF AGRA

Best Arabidopsis Sequence Match ( AT1G74230.1 )
(BLAST)

001: MAFLSKVGRL FSQTSSHVTA SSSMLQSIRC MSSSKIFVGG ISYSTDEFGL REAFSKYGEV VDAKIIVDRE TGRSRGFAFV TFTSTEEASN AMQLDGQDLH
101: GRRIRVNYAT ERGSGFGGRG FGGPGGGYGA SDGGYGAPAG GYGGGAGGYG GNSSYSGNAG GGGGYGGNSS YGGNAGGYGG NPPYSGNAVG GGGGYGSNFG
201: GGGGYGVAGG VGGSENFAQG SSTNAGFDDK FESNQPLGND TDHQTESGLG GDEQFGGSDN QFGDAENGNT ENGPVGFDQT DDGDVAKRA

Arabidopsis Description

RBG5Glycine-rich RNA-binding protein 5, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9C909]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.