Factsheet for Solyc10g083240.1.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 4
nucleus 2
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400072597	Potato	mitochondrion	97.67	97.67
KRH67959	Soybean	mitochondrion	66.67	66.15
VIT_08s0007g02860.t01	Wine grape	mitochondrion	65.12	63.16
Bra028739.1-P	Field mustard	mitochondrion	65.12	57.53
CDY04982	Canola	mitochondrion	65.12	57.53
CDY14089	Canola	mitochondrion	64.34	56.85
AT5G06210.1	Thale cress	mitochondrion	64.34	56.85
EES10764	Sorghum	mitochondrion	52.71	50.37
TraesCS2D01G294000.1	Wheat	mitochondrion	53.49	49.64
TraesCS2B01G312500.1	Wheat	mitochondrion	53.49	49.64
Os04t0414300-00	Rice	mitochondrion	51.94	48.91
TraesCS2A01G296100.1	Wheat	mitochondrion	51.94	48.2
HORVU2Hr1G073330.9	Barley	cytosol, nucleus	47.29	44.85
Solyc10g084630.1.1	Tomato	mitochondrion	41.86	39.13
Solyc09g092320.2.1	Tomato	mitochondrion, nucleus	32.56	36.21
Solyc10g051390.1.1	Tomato	nucleus	29.46	32.2
Solyc07g063900.2.1	Tomato	plastid	36.43	31.13
Solyc09g011210.2.1	Tomato	plastid	30.23	29.55
Solyc10g051380.1.1	Tomato	nucleus	28.68	28.46
Solyc07g049270.2.1	Tomato	mitochondrion	31.01	28.37
Solyc05g053780.2.1	Tomato	mitochondrion	34.88	27.95
Solyc06g035610.2.1	Tomato	mitochondrion	31.01	27.78
Solyc02g066930.2.1	Tomato	nucleus	38.76	23.15
Solyc01g109660.2.1	Tomato	extracellular	31.01	22.86
Solyc10g081180.1.1	Tomato	nucleus	31.78	18.64
Solyc10g047130.1.1	Tomato	nucleus	30.23	16.32
Solyc01g104840.2.1	Tomato	nucleus	27.91	16.14
Solyc02g088790.2.1	Tomato	extracellular, plastid	36.43	12.6
Solyc11g007160.1.1	Tomato	plastid	37.21	12.0
Solyc03g071560.2.1	Tomato	nucleus	28.68	11.78
Solyc11g008210.1.1	Tomato	nucleus	15.5	6.78

Protein Annotations

Gene3D:3.30.70.330	MapMan:35.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006950	GO:GO:0008150
GO:GO:0009507	GO:GO:0009536	GO:GO:0009628	GO:GO:1901002	InterPro:IPR000504	InterPro:IPR012677
UniProt:K4D3B1	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR45502	PANTHER:PTHR45502:SF1
InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	EnsemblPlantsGene:Solyc10g083240.1	EnsemblPlants:Solyc10g083240.1.1
UniParc:UPI0002769DA2	:	:	:	:	:

Description

No Description!

Coordinates

chr10:-:63091105..63094283

Molecular Weight (calculated)

13960.7 Da

IEP (calculated)

9.837

GRAVY (calculated)

-0.253

Length

129 amino acids

Sequence
(BLAST)

001: MAALRKLLLP KNTSVVISNS TIFLSRRGIA SKLFVGGLSF YTTEKALSEA FSQHGQVIEA KIVTDRVSDR SKGFGFVTYA SEDEAEKALQ EMNGKPLNGR
101: VVFVDYAKPK TDGGSTPIAR GPPEPPVEQ

Best Arabidopsis Sequence Match ( AT5G06210.1 )
(BLAST)

001: MAALARIGGR HLKSVCLINS SASCFFTQRR GVASKLFIGG LSFCTTEQGL SEAFSKCGQV VEAQIVMDRV SDRSKGFGFV TFASADEAQK ALMEFNGQQL
101: NGRTIFVDYA KAKQSLGGGG GYPIARGPPD PAVIAATRTT ETSKSD

Arabidopsis Description

S-RBP11Small RNA-binding protein 11, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9FFZ6]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.