Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 2
- plastid 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400064758 | Potato | mitochondrion | 91.2 | 78.49 |
| Solyc09g092320.2.1 | Tomato | mitochondrion, nucleus | 30.09 | 56.03 |
| Solyc05g053780.2.1 | Tomato | mitochondrion | 36.57 | 49.07 |
| Solyc10g051390.1.1 | Tomato | nucleus | 25.93 | 47.46 |
| Solyc10g081180.1.1 | Tomato | nucleus | 44.91 | 44.09 |
| Solyc10g051380.1.1 | Tomato | nucleus | 26.39 | 43.85 |
| VIT_17s0000g07330.t01 | Wine grape | plastid | 52.31 | 40.79 |
| EES16016 | Sorghum | mitochondrion | 45.83 | 39.6 |
| Os12t0502200-01 | Rice | mitochondrion | 47.22 | 39.53 |
| GSMUA_Achr9P07090_001 | Banana | mitochondrion | 43.52 | 39.5 |
| TraesCS3D01G424100.1 | Wheat | mitochondrion | 39.81 | 39.27 |
| Solyc10g083240.1.1 | Tomato | mitochondrion | 23.15 | 38.76 |
| TraesCS3A01G428400.1 | Wheat | mitochondrion | 40.28 | 38.5 |
| Solyc01g109660.2.1 | Tomato | extracellular | 31.02 | 38.29 |
| GSMUA_Achr4P03230_001 | Banana | mitochondrion | 45.37 | 38.28 |
| Zm00001d041750_P001 | Maize | mitochondrion | 45.83 | 37.93 |
| KRH01278 | Soybean | mitochondrion, nucleus, plastid | 42.13 | 37.3 |
| Zm00001d023734_P003 | Maize | nucleus, plastid | 49.54 | 37.28 |
| TraesCS3B01G465800.1 | Wheat | mitochondrion | 39.81 | 37.23 |
| KRH45033 | Soybean | nucleus, plastid | 40.28 | 35.51 |
| Solyc07g049270.2.1 | Tomato | mitochondrion | 23.15 | 35.46 |
| Bra035944.1-P | Field mustard | plastid | 42.59 | 34.98 |
| CDY16825 | Canola | plastid | 42.59 | 34.98 |
| Os07t0602600-01 | Rice | mitochondrion | 37.5 | 34.03 |
| Bra012986.1-P | Field mustard | mitochondrion | 46.76 | 33.11 |
| TraesCS5B01G470700.1 | Wheat | mitochondrion | 46.3 | 32.57 |
| HORVU3Hr1G094330.2 | Barley | mitochondrion | 45.83 | 32.35 |
| Zm00001d022065_P001 | Maize | mitochondrion | 45.83 | 32.14 |
| TraesCS5A01G460900.1 | Wheat | mitochondrion | 45.37 | 32.13 |
| HORVU5Hr1G110370.1 | Barley | mitochondrion | 43.52 | 32.08 |
| TraesCS5D01G473100.1 | Wheat | mitochondrion | 45.37 | 32.03 |
| Solyc02g088790.2.1 | Tomato | extracellular, plastid | 53.24 | 30.83 |
| KXG36643 | Sorghum | mitochondrion | 44.91 | 30.7 |
| AT5G61030.1 | Thale cress | mitochondrion | 43.06 | 30.1 |
| Os10t0321700-01 | Rice | mitochondrion | 43.98 | 29.97 |
| TraesCS2D01G184200.1 | Wheat | mitochondrion | 44.91 | 29.85 |
| TraesCS2B01G203200.1 | Wheat | mitochondrion | 43.98 | 29.78 |
| Solyc10g084630.1.1 | Tomato | mitochondrion | 18.98 | 29.71 |
| CDY02175 | Canola | mitochondrion | 45.37 | 28.91 |
| Solyc07g063900.2.1 | Tomato | plastid | 19.91 | 28.48 |
| CDX87197 | Canola | plastid | 42.59 | 27.96 |
| Solyc09g011210.2.1 | Tomato | plastid | 16.67 | 27.27 |
| Solyc06g035610.2.1 | Tomato | mitochondrion | 17.59 | 26.39 |
| Solyc10g047130.1.1 | Tomato | nucleus | 26.85 | 24.27 |
| Solyc01g104840.2.1 | Tomato | nucleus | 22.22 | 21.52 |
| Solyc03g071560.2.1 | Tomato | nucleus | 24.07 | 16.56 |
| Solyc11g008210.1.1 | Tomato | nucleus | 17.59 | 12.88 |
| TraesCS2A01G176700.1 | Wheat | mitochondrion | 42.59 | 12.55 |
| Solyc11g007160.1.1 | Tomato | plastid | 16.67 | 9.0 |
Protein Annotations
| MapMan:16.12.5.2 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 |
| InterPro:IPR000504 | InterPro:IPR012677 | UniProt:K4B725 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFscan:PS50102 |
| PANTHER:PTHR44202 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | EnsemblPlantsGene:Solyc02g066930.2 |
| EnsemblPlants:Solyc02g066930.2.1 | UniParc:UPI0002768FEE | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr2:+:37184926..37186711
Molecular Weight (calculated)
21959.0 Da
IEP (calculated)
4.359
GRAVY (calculated)
-0.794
Length
216 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSSKLFVGG LSYGTDETSL REAFSQHGQV IEARVIFDRD SGRSRGFGFV TYTSAEEASS ALSALDGQDL HGRRIRVNYA TEKRPGGFGR GSGGGGGFSY
101: GGGAGGYSYG NYGGGGNYGS NNSYPAGGGS YGGDSFGAGY GGGSSGSYNA GVSASNDFLN NSEFGGSPGT SHNGGEEQLS ADQGTESVDN DFTPGVERSS
201: SDDNDEPKDY ANSRSS
101: GGGAGGYSYG NYGGGGNYGS NNSYPAGGGS YGGDSFGAGY GGGSSGSYNA GVSASNDFLN NSEFGGSPGT SHNGGEEQLS ADQGTESVDN DFTPGVERSS
201: SDDNDEPKDY ANSRSS
001: MAFLSKVGRL FSQTSSHVTA SSSMLQSIRC MSSSKIFVGG ISYSTDEFGL REAFSKYGEV VDAKIIVDRE TGRSRGFAFV TFTSTEEASN AMQLDGQDLH
101: GRRIRVNYAT ERGSGFGGRG FGGPGGGYGA SDGGYGAPAG GYGGGAGGYG GNSSYSGNAG GGGGYGGNSS YGGNAGGYGG NPPYSGNAVG GGGGYGSNFG
201: GGGGYGVAGG VGGSENFAQG SSTNAGFDDK FESNQPLGND TDHQTESGLG GDEQFGGSDN QFGDAENGNT ENGPVGFDQT DDGDVAKRA
101: GRRIRVNYAT ERGSGFGGRG FGGPGGGYGA SDGGYGAPAG GYGGGAGGYG GNSSYSGNAG GGGGYGGNSS YGGNAGGYGG NPPYSGNAVG GGGGYGSNFG
201: GGGGYGVAGG VGGSENFAQG SSTNAGFDDK FESNQPLGND TDHQTESGLG GDEQFGGSDN QFGDAENGNT ENGPVGFDQT DDGDVAKRA
Arabidopsis Description
RBG5Glycine-rich RNA-binding protein 5, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9C909]
SUBAcon: [plastid,mitochondrion]
SUBAcon: [plastid,mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.