CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

cytosol 1
peroxisome 7

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EES15431

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G14420.1	EES15431	AT5G56290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os07t0152900-01	Rice	peroxisome	93.77	93.77
EER93339	Sorghum	peroxisome	92.14	92.39
TraesCS2D01G251800.2	Wheat	peroxisome, plastid	91.87	92.12
TraesCS2A01G250800.1	Wheat	peroxisome	91.87	92.12
TraesCS2B01G264100.2	Wheat	peroxisome, plastid	91.87	90.16
GSMUA_Achr7P07880_001	Banana	peroxisome, plasma membrane, unclear	88.08	88.56
Solyc07g056540.2.1	Tomato	plastid	87.8	87.33
KRH43857	Soybean	peroxisome	87.53	87.06
PGSC0003DMT400071115	Potato	cytosol	87.26	86.79
AT3G14420.1	Thale cress	peroxisome	86.18	86.65
KRH13608	Soybean	nucleus	86.72	86.25
Zm00001d018810_P002	Maize	peroxisome, plastid	96.75	85.41
VIT_19s0093g00510.t01	Wine grape	peroxisome	85.64	85.18
VIT_10s0003g03830.t01	Wine grape	peroxisome	85.09	84.41
AT3G14415.2	Thale cress	peroxisome	84.82	83.91
GSMUA_Achr4P22900_001	Banana	peroxisome	30.89	74.03
EES11443	Sorghum	peroxisome	82.11	73.01
EES11447	Sorghum	peroxisome	70.46	70.84
CDY70372	Canola	cytosol, mitochondrion, plastid	21.68	68.38
CDX88442	Canola	cytosol, mitochondrion, plastid	21.68	68.38
OQU90257	Sorghum	peroxisome	60.16	60.49
OQU90259	Sorghum	peroxisome	57.99	58.15
CDY52449	Canola	mitochondrion	33.6	56.88
Bra035032.1-P	Field mustard	mitochondrion	33.6	56.88
CDX86782	Canola	cytosol, peroxisome, plastid	34.15	56.5

Protein Annotations

MapMan:1.3.2	Gene3D:3.20.20.70	UniProt:A0A1B6Q918	InterPro:Aldolase_TIM	InterPro:Alpha-hydoxy_acid_DH_FMN	InterPro:FMN-dep_DH
InterPro:FMN_HAD	InterPro:FMN_hydac_DH_AS	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0008150	GO:GO:0008152	GO:GO:0010181	GO:GO:0016491	GO:GO:0055114	InterPro:IPR013785
InterPro:IPR037396	ProteinID:KXG34413.1	EnsemblPlants:KXG34415	ProteinID:KXG34415	ProteinID:KXG34415.1	ProteinID:OQU88444.1
PFAM:PF01070	PIRSF:PIRSF000138	ScanProsite:PS00557	PFscan:PS51349	PANTHER:PTHR10578	PANTHER:PTHR10578:SF80
SMART:SM01240	EnsemblPlantsGene:SORBI_3002G036000	SUPFAM:SSF51395	UniParc:UPI0001C80B3E	SEG:seg	:

Description

hypothetical protein

Coordinates

chr2:+:3388485..3392015

Molecular Weight (calculated)

40245.0 Da

IEP (calculated)

9.585

GRAVY (calculated)

0.051

Length

369 amino acids

Sequence
(BLAST)

001: MGEITNVMEY QAIAKQKLPK MAYDYYASGA EDEWTLKENR EAFSRILFRP RILIDVSKID MTTTVLGFKI SMPIMVAPTA MQKMAHPDGE YATARAAAAA
101: GTIMTLSSWA TSSVEEVAST GPGIRFFQLY VYKDRKVVEQ LVRRAERAGF KAIALTVDTP RLGRREADIK NRFVLPPHLT LKNFEGLDLG KMDQAADSGL
201: ASYVAGQVDR TLSWKDVKWL QTITTMPILV KGVITAEDTR LAVANGAAGI IVSNHGARQL DYVPATISAL EEVVKAARGQ IPVFLDGGVR RGTDVFKALA
301: LGAAGVFVGR PVVFSLAAAG EAGVSNVLRM LRDEFELTMA LSGCTSLADI TRNHIITESD RLRVMPSRL

Best Arabidopsis Sequence Match ( AT3G14420.2 )
(BLAST)

001: MEITNVTEYD AIAKQKLPKM VYDYYASGAE DQWTLQENRN AFARILFRPR ILIDVSKIDM TTTVLGFKIS MPIMVAPTAM QKMAHPDGEY ATARAASAAG
101: TIMTLSSWAT SSVEEVASTG PGIRFFQLYV YKNRNVVEQL VRRAERAGFK AIALTVDTPR LGRRESDIKN RFTLPPNLTL KNFEGLDLGK MDEANDSGLA
201: SYVAGQIDRT LSWKDVQWLQ TITKLPILVK GVLTGEDARI AIQAGAAGII VSNHGARQLD YVPATISALE EVVKATQGRI PVFLDGGVRR GTDVFKALAL
301: GASGIFIGRP VVFSLAAEGE AGVRKVLQML RDEFELTMAL SGCRSLKEIS RNHITTEWDT PRPSARL

Arabidopsis Description

GLO1Peroxisomal (S)-2-hydroxy-acid oxidase GLO1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LRR9]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.