Factsheet for TraesCS2B01G264100.2

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid

Predictor Summary:

peroxisome 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	peroxisome, plastid
Any Predictor:	peroxisome
MultiLoc:	peroxisome
PProwler:	peroxisome
WoLF PSORT:	peroxisome
YLoc:	peroxisome

plastid: 28542341

msms PMID: 28542341 doi

K Shi, J Gu, H Guo, L Zhao, Y Xie, H Xiong, J Li, S Zhao, X Song, L Liu

National Key Facility for Crop Gene Resources and Genetic Improvement, Institute of Crop Sciences, Chinese Academy of Agricultural Sciences, Beijing, China., School of Life Sciences, Qingdao Agricultural University, Qingdao, Shandong, China.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS6A01G105000.1
TraesCS7A01G241500.5
TraesCS7B01G137000.2
TraesCS7D01G240500.3

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G14420.1	TraesCS6A01G105000.1	AT5G56290.1	21798944
AT3G14420.1	TraesCS7A01G241500.5	AT5G56290.1	21798944
AT3G14420.1	TraesCS7B01G137000.2	AT5G56290.1	21798944
AT3G14420.1	TraesCS7D01G240500.3	AT5G56290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G251800.2	Wheat	peroxisome, plastid	97.87	100.0
TraesCS2A01G250800.1	Wheat	peroxisome	97.87	100.0
Os07t0152900-01	Rice	peroxisome	91.76	93.5
KXG34415	Sorghum	peroxisome	90.16	91.87
Solyc07g056540.2.1	Tomato	plastid	86.44	87.6
TraesCS5B01G426500.1	Wheat	golgi	85.37	86.76
AT3G14420.1	Thale cress	peroxisome	84.57	86.65
GSMUA_Achr7P07880_001	Banana	peroxisome, plasma membrane, unclear	84.57	86.65
PGSC0003DMT400071115	Potato	cytosol	84.84	85.98
KRH43857	Soybean	peroxisome	84.04	85.18
AT3G14415.2	Thale cress	peroxisome	84.04	84.72
KRH13608	Soybean	nucleus	83.24	84.37
VIT_19s0093g00510.t01	Wine grape	peroxisome	83.24	84.37
VIT_10s0003g03830.t01	Wine grape	peroxisome	82.45	83.33
Zm00001d018810_P002	Maize	peroxisome, plastid	88.3	79.43
TraesCS2B01G490700.1	Wheat	peroxisome	77.13	78.59
GSMUA_Achr4P22900_001	Banana	peroxisome	29.79	72.73
CDY70372	Canola	cytosol, mitochondrion, plastid	21.54	69.23
CDX88442	Canola	cytosol, mitochondrion, plastid	21.54	69.23
TraesCS5B01G266100.1	Wheat	peroxisome	55.32	56.99
CDY52449	Canola	mitochondrion	32.18	55.5
Bra035032.1-P	Field mustard	mitochondrion	32.18	55.5
CDX86782	Canola	cytosol, peroxisome, plastid	32.71	55.16
TraesCS2B01G194600.3	Wheat	peroxisome	39.63	38.11

Protein Annotations

MapMan:1.3.2	Gene3D:3.20.20.70	InterPro:Aldolase_TIM	InterPro:Alpha-hydoxy_acid_DH_FMN	ncoils:Coil	InterPro:FMN-dep_DH
InterPro:FMN_HAD	InterPro:FMN_hydac_DH_AS	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0008150	GO:GO:0008152	GO:GO:0010181	GO:GO:0016491	GO:GO:0055114	InterPro:IPR013785
InterPro:IPR037396	PFAM:PF01070	PIRSF:PIRSF000138	ScanProsite:PS00557	PFscan:PS51349	PANTHER:PTHR10578
PANTHER:PTHR10578:SF80	SUPFAM:SSF51395	EnsemblPlantsGene:TraesCS2B01G264100	EnsemblPlants:TraesCS2B01G264100.2	TIGR:cd02809	SEG:seg

Description

No Description!

Coordinates

chr2B:-:356594411..356596783

Molecular Weight (calculated)

41009.7 Da

IEP (calculated)

8.378

GRAVY (calculated)

0.004

Length

376 amino acids

Sequence
(BLAST)

001: MDGDLHRKME ITNVTEYQAI AKQKLPKMIY DYYASGAEDE WTLQENREAF ARILFRPRIL IDVSKIDMTT TILGFKLSMP IMISPTAMQK MAHPDGEYAT
101: ARAASAAGTI MTLSSWATSS VEEVASTGPG IRFFQLYVYK DRKVVEQLVR RAEKAGFKAI ALTVDTPRLG RREADIKNRF VLPPNLTLKN FEGLDLGKMD
201: QANDSGLASY VAGQIDRTLS WKDVKWLQSI TTMPILVKGV ITAEDSRLAV ENGAAGIIVS NHGARQLDYV PATISALEEV VKGAGGQIPV FLDGGVRRGT
301: DVFKALALGA AGVFIGRPVV FSLAVAGEAG VSNVLKMLRD EFELTMALSG CNSLADITRN HVVTEADKFG VMPSRL

Best Arabidopsis Sequence Match ( AT3G14420.2 )
(BLAST)

001: MEITNVTEYD AIAKQKLPKM VYDYYASGAE DQWTLQENRN AFARILFRPR ILIDVSKIDM TTTVLGFKIS MPIMVAPTAM QKMAHPDGEY ATARAASAAG
101: TIMTLSSWAT SSVEEVASTG PGIRFFQLYV YKNRNVVEQL VRRAERAGFK AIALTVDTPR LGRRESDIKN RFTLPPNLTL KNFEGLDLGK MDEANDSGLA
201: SYVAGQIDRT LSWKDVQWLQ TITKLPILVK GVLTGEDARI AIQAGAAGII VSNHGARQLD YVPATISALE EVVKATQGRI PVFLDGGVRR GTDVFKALAL
301: GASGIFIGRP VVFSLAAEGE AGVRKVLQML RDEFELTMAL SGCRSLKEIS RNHITTEWDT PRPSARL

Arabidopsis Description

GLO1Peroxisomal (S)-2-hydroxy-acid oxidase GLO1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LRR9]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.