Factsheet for Solyc06g071790.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

nucleus: 25464976
plastid: 28183294
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 28183294 doi

R Tamburino, M Vitale, A Ruggiero, M Sassi, L Sannino, S Arena, A Costa, G Batelli, N Zambrano, A Scaloni, S Grillo, N Scotti

Center of Genetics Engineering (CEINGE) Biotecnologie Avanzate S.c. a R.l, via Pansini, 80100, Napoli, Italy., Department of Molecular Medicine and Medical Biotechnology, University of Naples Federico II, via Pansini, 80100, Napoli, Italy., Institute for the Animal Production System in the Mediterranean Environment, National Research Council of Italy (CNR-ISPAAM), via Argine 1085, 80147, Napoli, Italy., Institute of Biosciences and BioResources, National Research Council of Italy (CNR-IBBR), via Università 133, 80055, Portici, NA, Italy., Institute of Biosciences and BioResources, National Research Council of Italy (CNR-IBBR), via Università 133, 80055, Portici, NA, Italy. nscotti@unina.it.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400092196	Potato	plastid	98.44	92.87
GSMUA_AchrUn_...	Banana	cytosol	36.67	90.16
Solyc03g112150.1.1	Tomato	plastid	90.44	85.33
CDX82758	Canola	plastid	51.78	82.04
CDX98668	Canola	plastid	49.33	80.14
CDY49022	Canola	plastid	60.67	79.59
CDY49485	Canola	plastid	60.22	79.24
Bra013458.1-P	Field mustard	plastid	82.0	78.51
VIT_17s0000g09370.t01	Wine grape	plastid	84.67	78.4
Bra033753.1-P	Field mustard	plastid	82.44	78.27
CDY54570	Canola	plastid	54.22	78.21
CDX94002	Canola	plastid	49.11	78.09
Bra038805.1-P	Field mustard	plastid	82.22	77.89
CDX78988	Canola	plastid	52.22	77.81
AT4G20360.1	Thale cress	plastid	82.22	77.73
KRH57147	Soybean	plastid	82.22	77.24
CDY31442	Canola	plastid	53.56	77.24
Bra020926.1-P	Field mustard	plastid	72.22	76.11
KRH03857	Soybean	plastid	75.33	75.84
Zm00001d017092_P001	Maize	plastid	77.56	75.05
Zm00001d050969_P001	Maize	plastid	77.11	74.46
EES05366	Sorghum	plastid	76.67	74.03
Os02t0595700-01	Rice	plastid	76.67	73.88
TraesCS6B01G238600.1	Wheat	plastid	76.22	73.29
TraesCS6D01G193000.1	Wheat	nucleus, plastid	76.44	73.19
TraesCS6A01G209800.1	Wheat	plastid	76.44	73.19
GSMUA_Achr6P06690_001	Banana	mitochondrion, plastid	47.56	68.37
HORVU6Hr1G053680.5	Barley	plastid	70.67	61.87
Solyc09g073000.2.1	Tomato	plastid	58.44	58.44
Solyc06g008940.2.1	Tomato	unclear	58.22	58.09
Solyc06g009960.1.1	Tomato	cytosol	26.22	28.78
Solyc03g118990.1.1	Tomato	cytosol	4.22	27.14
Solyc11g069700.1.1	Tomato	nucleus	26.89	27.07
Solyc06g009970.2.1	Tomato	extracellular, nucleus, plastid	26.89	27.01
Solyc06g005060.2.1	Tomato	cytosol	26.89	27.01
Solyc06g069020.2.1	Tomato	cytosol, nucleus	25.11	21.16
Solyc12g036410.1.1	Tomato	cytosol	24.22	18.54
Solyc03g119290.2.1	Tomato	cytosol	23.78	18.2

Protein Annotations

MapMan:17.7.4.1	Gene3D:2.40.30.10	Gene3D:3.40.50.300	InterPro:EFTU_2	InterPro:EFTu-like_2	GO:GO:0000166
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003746	GO:GO:0003824	GO:GO:0003924
GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006412
GO:GO:0006414	GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016787	GO:GO:0019538	InterPro:G_TR_CS	InterPro:IPR000795	UniProt:K4C8Q1	HAMAP:MF_00118_B
InterPro:P-loop_NTPase	PFAM:PF00009	PFAM:PF03143	PFAM:PF03144	PRINTS:PR00315	ScanProsite:PS00301
PFscan:PS51722	PANTHER:PTHR43721	PANTHER:PTHR43721:SF13	SUPFAM:SSF50447	SUPFAM:SSF50465	SUPFAM:SSF52540
InterPro:Small_GTP-bd_dom	EnsemblPlantsGene:Solyc06g071790.2	EnsemblPlants:Solyc06g071790.2.1	InterPro:TF_GTP-bd_dom	TIGRFAMs:TIGR00231	InterPro:Transl_B-barrel_sf
InterPro:Transl_elong_EF1A/Init_IF2_C	InterPro:Transl_elong_EFTu/EF1A_C	InterPro:Transl_elong_EFTu/EF1A_bac/org	UniParc:UPI00027672D7	SEG:seg	:

Description

No Description!

Coordinates

chr6:-:44211720..44213544

Molecular Weight (calculated)

48867.9 Da

IEP (calculated)

6.597

GRAVY (calculated)

-0.186

Length

450 amino acids

Sequence
(BLAST)

001: MASISAASAT AAAAASTKIN TSGTVLPSKS SKLILSSSFT PNPSTLFLHS PATTAPSSSS SRHRRFTVRA ARGKFERKKP HVNIGTIGHV DHGKTTLTAA
101: LTMALASLGN SAPKKYDEID AAPEERARGI TINTATVEYE TENRHYAHVD CPGHADYVKN MITGAAQMDG AILVVSGADG PMPQTKEHIL LAKQVGVPNM
201: VVFLNKEDQV DDEELLELVE LEVRELLSSY EGDDQWVDKI YKLMDSVDEY IPIPQRQTEL PFLMAIEDVF SITGRGTVAT GRVERGTVKT GEIVDIVGLK
301: DTRNTTVTGV EMFQKILDEA MAGDNVGLLL RGIQKIDIQR GMVLAKPGSI TPHTKFEALV YVLKKEEGGR HSPFFAGYRP QFYMRTTDVT GKVTAIMTDK
401: GEESKMVMPG DRVNMVVELI MPVACEQGMR FAIREGGKTV GAGVIQKILE

Best Arabidopsis Sequence Match ( AT4G20360.2 )
(BLAST)

001: MAISAPAACS SSSRILCSYS SPSPSLCPAI STSGKLKTLT LSSSFLPSYS LTTTSASQST RRSFTVRAAR GKFERKKPHV NIGTIGHVDH GKTTLTAALT
101: MALASIGSSV AKKYDEIDAA PEERARGITI NTATVEYETE NRHYAHVDCP GHADYVKNMI TGAAQMDGAI LVVSGADGPM PQTKEHILLA KQVGVPDMVV
201: FLNKEDQVDD AELLELVELE VRELLSSYEF NGDDIPIISG SALLAVETLT ENPKVKRGDN KWVDKIYELM DAVDDYIPIP QRQTELPFLL AVEDVFSITG
301: RGTVATGRVE RGTVKVGETV DLVGLRETRS YTVTGVEMFQ KILDEALAGD NVGLLLRGIQ KADIQRGMVL AKPGSITPHT KFEAIIYVLK KEEGGRHSPF
401: FAGYRPQFYM RTTDVTGKVT KIMNDKDEES KMVMPGDRVK IVVELIVPVA CEQGMRFAIR EGGKTVGAGV IGTILE

Arabidopsis Description

TUFAElongation factor Tu, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P17745]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.