Factsheet for Solyc03g118990.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 3
nucleus 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	secretory
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os02t0456500-01	Rice	cytosol	75.71	20.46
Os04t0270100-01	Rice	cytosol	77.14	11.54
HORVU2Hr1G012860.1	Barley	cytosol	80.0	11.5
Solyc06g069020.2.1	Tomato	cytosol, nucleus	82.86	10.86
TraesCS2D01G075300.1	Wheat	cytosol	78.57	10.32
TraesCS2B01G091600.1	Wheat	cytosol	78.57	10.32
TraesCS2A01G076700.1	Wheat	cytosol, golgi, nucleus	78.57	10.32
EES10540	Sorghum	cytosol	78.57	10.22
GSMUA_Achr3P07900_001	Banana	cytosol	77.14	10.17
Zm00001d004172_P005	Maize	cytosol	78.57	10.17
Zm00001d025100_P005	Maize	cytosol	78.57	9.8
Solyc06g009960.1.1	Tomato	cytosol	48.57	8.29
Solyc11g069700.1.1	Tomato	nucleus	48.57	7.61
Solyc06g009970.2.1	Tomato	extracellular, nucleus, plastid	48.57	7.59
Solyc06g005060.2.1	Tomato	cytosol	48.57	7.59
Solyc03g119290.2.1	Tomato	cytosol	45.71	5.44
Solyc12g036410.1.1	Tomato	cytosol	42.86	5.1
Solyc09g073000.2.1	Tomato	plastid	30.0	4.67
Solyc06g008940.2.1	Tomato	unclear	30.0	4.66
Solyc06g071790.2.1	Tomato	nucleus, plastid	27.14	4.22
Solyc03g112150.1.1	Tomato	plastid	27.14	3.98

Protein Annotations

EnsemblPlants:Solyc03g118990.1.1	EnsemblPlantsGene:Solyc03g118990.1	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0016787	InterPro:IPR000795	InterPro:P-loop_NTPase
InterPro:TF_GTP-bd_dom	PANTHER:PTHR23115	PANTHER:PTHR23115:SF36	PFAM:PF00009	SUPFAM:SSF52540	UniParc:UPI00027661B7
UniProt:K4BM48	MapMan:35.2	:	:	:	:

Description

No Description!

Coordinates

chr3:-:67724174..67724569

Molecular Weight (calculated)

7767.3 Da

IEP (calculated)

4.670

GRAVY (calculated)

-0.306

Length

70 amino acids

Sequence
(BLAST)

1: MISGTSQANI GVLVISARKN ELETGYERGG QTREDVQLAT TLGVSKLLLV VNKMDDPTVV WSKERYEEIQ

Best Arabidopsis Sequence Match ( AT1G18070.1 )
(BLAST)

001: MDLEAEIRAL QLESADENNG VVIPEVHNSH EVENLDKAPE DLKDEVQESI PVPDEQEASE DHDEVMLHPV HNPAKAKEKA AQEKAAKEEA EDVAEANKKR
101: HLNVVFIGHV DAGKSTIGGQ ILFLSGQVDD RQIQKYEKEA KDKSRESWYM AYIMDTNEEE RLKGKTVEVG RAHFETESTR FTILDAPGHK SYVPNMISGA
201: SQADIGVLVI SARKGEFETG YERGGQTREH VQLAKTLGVS KLIVVVNKMD DPTVNWSKER YDEIEQKMVP FLKASGYNTK KDVVFLPISG LMGKNMDQRM
301: GQEICPWWSG PSFFEVLDSI EIPPRDPNGP FRMPIIDKFK DMGTVVMGKV ESGSIREGDS LVVMPNKEQV KVVAIYCDED KVKRAGPGEN LRVRITGIED
401: EDILSGFVLS SIVNPVPAVT EFVAQLQILE LLDNAIFTAG YKAILHIHAV VEECEIIELK SQIDLKTRKP MKKKVLFVKN GAAVVCRIQV TNSICIEKFS
501: DFPQLGRFTL RTEGKTIAVG KVTELLSSVS SA

Arabidopsis Description

T10F20.8 protein [Source:UniProtKB/TrEMBL;Acc:Q9LMS7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.