Factsheet for TraesCS2A01G076700.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi, nucleus, cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, golgi, nucleus
Any Predictor:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

golgi: 25769308
nucleus: 26228564

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

msms PMID: 26228564 doi

E Bancel, T Bonnot, M Davanture, G Branlard, M Zivy, P Martre

Blaise Pascal University, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Avenue des Landais, F-63 170 Aubière, France., CNRS, PAPPSO, UMR 0320/8120 Génétique Quantitative et Évolution - Le Moulon, F-91190 Gif-sur-Yvette, France., INRA, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, 5 chemin de Beaulieu, F-63 039 Clermont-Ferrand, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2B01G091600.1	Wheat	cytosol	99.44	99.44
TraesCS2D01G075300.1	Wheat	cytosol	99.25	99.25
HORVU2Hr1G012860.1	Barley	cytosol	87.43	95.69
Os04t0270100-01	Rice	cytosol	73.17	83.33
EES10540	Sorghum	cytosol	83.68	82.9
Zm00001d004172_P005	Maize	cytosol	83.68	82.44
Solyc03g118990.1.1	Tomato	cytosol	10.32	78.57
GSMUA_Achr3P07900_001	Banana	cytosol	75.61	75.89
KRH60492	Soybean	cytosol	70.54	74.46
KRH41785	Soybean	cytosol, nucleus	70.36	74.4
Zm00001d025100_P005	Maize	cytosol	77.49	73.62
VIT_17s0000g02860.t01	Wine grape	plastid	68.29	70.13
PGSC0003DMT400014425	Potato	cytosol	63.79	69.25
AT1G18070.3	Thale cress	cytosol	67.35	66.11
CDY19192	Canola	cytosol	67.17	65.93
CDX96737	Canola	cytosol	62.85	64.67
CDX83874	Canola	endoplasmic reticulum	60.79	62.55
CDY21721	Canola	cytosol	66.6	61.63
CDY26187	Canola	golgi, vacuole	67.35	61.37
CDX81859	Canola	endoplasmic reticulum, golgi, plasma membrane	66.42	60.62
Bra016571.1-P	Field mustard	cytosol	62.29	46.83
TraesCS4A01G107600.1	Wheat	cytosol	29.83	35.57
TraesCS4A01G107700.1	Wheat	cytosol	29.83	35.57
TraesCS5A01G415400.1	Wheat	cytosol	29.83	35.57
TraesCS5A01G415600.1	Wheat	cytosol	29.83	35.57
TraesCS2A01G083300.1	Wheat	cytosol, golgi	29.64	35.35
TraesCS2A01G083000.1	Wheat	cytosol	29.46	35.12
TraesCS6A01G209800.1	Wheat	plastid	21.95	24.89
TraesCS4A01G330400.1	Wheat	mitochondrion	21.01	24.78
TraesCS2A01G444100.1	Wheat	cytosol	31.14	24.38
TraesCS2A01G592500.1	Wheat	cytosol	30.39	23.65

Protein Annotations

MapMan:17.3.2.1.2	Gene3D:2.40.30.10	Gene3D:3.40.50.300	InterPro:EFTu-like_2	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0016787	InterPro:G_TR_CS
InterPro:IPR000795	InterPro:P-loop_NTPase	PFAM:PF00009	PFAM:PF03143	PFAM:PF03144	PRINTS:PR00315
ScanProsite:PS00301	PFscan:PS51722	PANTHER:PTHR23115	PANTHER:PTHR23115:SF36	SUPFAM:SSF50447	SUPFAM:SSF50465
SUPFAM:SSF52540	InterPro:TF_GTP-bd_dom	EnsemblPlantsGene:TraesCS2A01G076700	EnsemblPlants:TraesCS2A01G076700.1	InterPro:Transl_B-barrel_sf	InterPro:Transl_elong_EF1A/Init_IF2_C
InterPro:Transl_elong_EFTu/EF1A_C	TIGR:cd01883	TIGR:cd03704	TIGR:cd04089	SEG:seg	:

Description

No Description!

Coordinates

chr2A:+:34321629..34329989

Molecular Weight (calculated)

58910.4 Da

IEP (calculated)

5.448

GRAVY (calculated)

-0.388

Length

533 amino acids

Sequence
(BLAST)

001: MEHDAPPAPS HHAQDDGAVD DWARDDAEPS DRHAAPAEES PEPADAAAAP APPAEGVNDI QSSLQSLELK TNAPAHEDVQ MVADEEEEEK RHINLVFIGH
101: VDAGKSTAGG QILFLSGQVD DRTIQKYEKE AKDKSRESWY MAYIMDTNEE ERLKGKTVEV GRAHFETENT RFTILDAPGH KSYVPNMISG ASQADIGVLV
201: ISARKGEFET GYERGGQTRE HVLLAKTLGV AKLVVVINKM DEPTVQWSKE RYDEIEGKMI PFLRSSGYNV KKDVQFLPIS GLCGANMKTR MDKSICSWWN
301: GPCLFEILDK IEVPLRDPKG PVRLPIIDKY KDMGTVVMGK LENGTIREGD SLLVMPNKTH VKVTGINLDE KKVRRAGPNE NVRVKVSGIE EEDIMAGFVL
401: SSVANPIGAF TEFNAQLQIL ELLDNAIFTA GYKAVLHIHS VVEECEIVDL IEEIDMKKAK VTDPKKKKTK RKPLFVKNGA VVVCRVQVTN LICIEKFSDF
501: PQLGRFTLRT EGKTIAVGKV VDVPPVGRST FSA

Best Arabidopsis Sequence Match ( AT1G18070.1 )
(BLAST)

001: MDLEAEIRAL QLESADENNG VVIPEVHNSH EVENLDKAPE DLKDEVQESI PVPDEQEASE DHDEVMLHPV HNPAKAKEKA AQEKAAKEEA EDVAEANKKR
101: HLNVVFIGHV DAGKSTIGGQ ILFLSGQVDD RQIQKYEKEA KDKSRESWYM AYIMDTNEEE RLKGKTVEVG RAHFETESTR FTILDAPGHK SYVPNMISGA
201: SQADIGVLVI SARKGEFETG YERGGQTREH VQLAKTLGVS KLIVVVNKMD DPTVNWSKER YDEIEQKMVP FLKASGYNTK KDVVFLPISG LMGKNMDQRM
301: GQEICPWWSG PSFFEVLDSI EIPPRDPNGP FRMPIIDKFK DMGTVVMGKV ESGSIREGDS LVVMPNKEQV KVVAIYCDED KVKRAGPGEN LRVRITGIED
401: EDILSGFVLS SIVNPVPAVT EFVAQLQILE LLDNAIFTAG YKAILHIHAV VEECEIIELK SQIDLKTRKP MKKKVLFVKN GAAVVCRIQV TNSICIEKFS
501: DFPQLGRFTL RTEGKTIAVG KVTELLSSVS SA

Arabidopsis Description

T10F20.8 protein [Source:UniProtKB/TrEMBL;Acc:Q9LMS7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.