Factsheet for Solyc05g013380.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, extracellular, nucleus

Predictor Summary:

cytosol 4
peroxisome 3
plastid 1

Predictors

GFP

MS/MS

Papers

plastid: 26371478
nucleus: 28394025
extracellular: 29876421

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400047918	Potato	cytosol	99.17	99.17
CDY25781	Canola	cytosol	11.02	91.38
VIT_00s0225g00130.t01	Wine grape	cytosol	88.36	88.36
Solyc01g007940.2.1	Tomato	cytosol	86.07	87.53
CDY61225	Canola	peroxisome	86.69	86.69
GSMUA_Achr6P29540_001	Banana	cytosol	86.69	86.69
Bra016202.1-P	Field mustard	cytosol	86.69	86.51
AT1G70580.1	Thale cress	cytosol, nucleus, peroxisome	86.07	86.07
CDY66294	Canola	cytosol	85.86	85.86
Bra024580.1-P	Field mustard	cytosol	85.03	85.56
Bra016353.1-P	Field mustard	cytosol	85.03	85.56
CDY04729	Canola	cytosol	85.03	85.56
CDY44130	Canola	cytosol	85.03	85.56
CDY41452	Canola	peroxisome	84.62	85.15
GSMUA_Achr8P15810_001	Banana	cytosol	84.82	84.82
KRH69622	Soybean	cytosol	84.62	84.62
TraesCS2A01G261600.1	Wheat	peroxisome	83.99	84.34
TraesCS2B01G280600.1	Wheat	plastid	83.99	84.34
Os07t0108300-01	Rice	extracellular, nucleus, plasma membrane	85.03	84.33
KRH74536	Soybean	cytosol	84.2	84.2
AT1G23310.1	Thale cress	cytosol	83.99	83.99
Bra012371.1-P	Field mustard	cytosol	79.42	83.77
CDX91708	Canola	peroxisome	70.06	83.62
CDY25780	Canola	peroxisome	69.85	83.37
KXG34265	Sorghum	cytosol	82.33	82.85
Zm00001d007937_P001	Maize	mitochondrion	81.29	81.63
CDX91589	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	22.04	80.92
CDX88411	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	22.04	80.92
CDX86159	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	22.04	80.92
HORVU2Hr1G063740.6	Barley	peroxisome, vacuole	80.25	79.42
TraesCS2D01G262400.2	Wheat	cytosol	78.38	75.55
CDY12474	Canola	peroxisome, plastid	80.46	72.07
Bra009959.1-P	Field mustard	cytosol, peroxisome, plasma membrane	37.63	52.62
Solyc03g123600.2.1	Tomato	cytosol	49.06	48.76
Solyc06g063090.2.1	Tomato	extracellular	49.69	44.1
Solyc03g123610.2.1	Tomato	plastid	48.02	38.12
CDX86161	Canola	cytosol	7.28	26.52
Solyc07g026900.1.1	Tomato	cytosol	19.54	21.32
Solyc12g008740.1.1	Tomato	cytosol	19.13	21.2
Solyc01g095080.2.1	Tomato	cytosol	20.79	20.62
Solyc02g063540.1.1	Tomato	cytosol	12.06	20.42
Solyc12g056180.1.1	Tomato	cytosol	19.33	19.66
Solyc02g091990.2.1	Tomato	cytosol	19.13	19.62
Solyc08g081550.2.1	Tomato	cytosol	19.13	19.49
Solyc03g043890.2.1	Tomato	cytosol	18.92	19.32
Solyc08g081540.2.1	Tomato	cytosol	19.33	19.25
Solyc05g050010.2.1	Tomato	cytosol	18.3	18.49
Solyc04g077410.2.1	Tomato	cytosol	18.09	18.47
Solyc08g008100.2.1	Tomato	nucleus	12.89	16.99
Solyc03g007070.2.1	Tomato	cytosol	18.71	16.82
Solyc08g079750.2.1	Tomato	plastid	18.09	15.88
Solyc08g008110.2.1	Tomato	cytosol, nucleus	3.33	15.84

Protein Annotations

MapMan:1.3.3.1	Gene3D:3.40.640.10	Gene3D:3.90.1150.10	InterPro:Aminotransferase_I/II	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016829
GO:GO:0016847	GO:GO:0030170	GO:GO:0042218	InterPro:IPR015421	InterPro:IPR015422	UniProt:K4BY59
PFAM:PF00155	PANTHER:PTHR11751	PANTHER:PTHR11751:SF373	InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_Trfase_dom1	InterPro:PyrdxlP-dep_Trfase_major
SUPFAM:SSF53383	EnsemblPlantsGene:Solyc05g013380.2	EnsemblPlants:Solyc05g013380.2.1	UniParc:UPI0002765EBB	:	:

Description

No Description!

Coordinates

chr5:+:6451782..6457884

Molecular Weight (calculated)

53418.6 Da

IEP (calculated)

7.064

GRAVY (calculated)

-0.209

Length

481 amino acids

Sequence
(BLAST)

001: MSSKALDYEN LNENVKKCQY AVRGELYLRA SELQKEGKKI IFTNVGNPHA LGQKPLTFPR QVIALCQAPF LLDDPNVGLI FPADAIARAK QFLGMTSGGL
101: GAYSDSRGIP GVRKEVAEFI ERRDGYPSDP ELIFLTDGAS KGVMQILNSI IRGPSDGILV PVPQYPLYSA SIQLLGGSLV PYYLEETANW GLDINDLRQS
201: VAQARYKGIT VRAMVIINPG NPTGQCLSVA NLKQIIQFCH QENLVLLGDE VYQQNIYQDE RPFISARKVL LDMGLPLSKE VQLVSFHTVS KGYWGECGQR
301: GGYFEMTNIP PKAVEEIYKV ASISLSPNVP GQIFMGLMVN PPKPGDISYD QYVRESKGIL ESLRKRAHMM TDGFNSCRNV VCNFTEGAMY SFPQIRLPPK
401: AIETANKLGK APDVLYCLRL LEATGISTVP GSGFGQKEGV FHLRTTILPA EEDMPAIMES FKKFNDEFME KYEDHKGYSR M

Best Arabidopsis Sequence Match ( AT1G70580.4 )
(BLAST)

001: MSLKALDYES LNENVKNCQY AVRGELYLRA SELQKEGKKI IFTNVGNPHA LGQKPLTFPR QVVSLCQAPF LLDDPNVGMI FPADAIARAK HYLSLTSGGL
101: GAYSDSRGLP GVRKEVAEFI ERRDGYPSDP ELIFLTDGAS KGVMQILNCV IRGQKDGILV PVPQYPLYSA TISLLGGTLV PYYLEESENW GLDVNNLRQS
201: VAQARSQGIT VRAMVIINPG NPTGQCLSEA NIREILRFCC DERLVLLGDE VYQQNIYQDE RPFISSKKVL MDMGAPISKE VQLISFHTVS KGYWGECGQR
301: GGYFEMTNIP PRTVEEIYKV ASIALSPNVS AQIFMGLMVS PPKPGDISYD QFVRESKGIL ESLRRRARMM TDGFNSCKNV VCNFTEGAMY SFPQIKLPSK
401: AIQAAKQAGK VPDVFYCLKL LEATGISTVP GSGFGQKEGV FHLRTTILPA EEEMPEIMDS FKKFNDEFMS QYADNFGYSR M

Arabidopsis Description

GGAT2Glutamate--glyoxylate aminotransferase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9S7E9]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.