Factsheet for VIT_00s0225g00130.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
peroxisome 3
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P29540_001	Banana	cytosol	90.23	90.23
GSMUA_Achr8P15810_001	Banana	cytosol	88.98	88.98
PGSC0003DMT400047918	Potato	cytosol	88.77	88.77
Solyc05g013380.2.1	Tomato	extracellular, nucleus, plastid	88.36	88.36
Bra016202.1-P	Field mustard	cytosol	88.36	88.17
CDY61225	Canola	peroxisome	88.15	88.15
KRH69622	Soybean	cytosol	87.94	87.94
CDY25781	Canola	cytosol	10.6	87.93
Os07t0108300-01	Rice	extracellular, nucleus, plasma membrane	88.36	87.63
KRH74536	Soybean	cytosol	87.53	87.53
CDY66294	Canola	cytosol	87.53	87.53
Bra024580.1-P	Field mustard	cytosol	86.9	87.45
Bra016353.1-P	Field mustard	cytosol	86.9	87.45
CDY04729	Canola	cytosol	86.9	87.45
CDY44130	Canola	cytosol	86.9	87.45
CDY41452	Canola	peroxisome	86.9	87.45
AT1G70580.1	Thale cress	cytosol, nucleus, peroxisome	87.32	87.32
TraesCS2B01G280600.1	Wheat	plastid	86.49	86.85
TraesCS2A01G261600.1	Wheat	peroxisome	86.49	86.85
CDX91708	Canola	peroxisome	72.56	86.6
KXG34265	Sorghum	cytosol	85.65	86.19
AT1G23310.1	Thale cress	cytosol	86.07	86.07
Solyc01g007940.2.1	Tomato	cytosol	84.62	86.05
PGSC0003DMT400042202	Potato	cytosol, mitochondrion, peroxisome, plastid	15.18	85.88
CDY25780	Canola	peroxisome	71.93	85.86
Bra012371.1-P	Field mustard	cytosol	81.29	85.75
Zm00001d007937_P001	Maize	mitochondrion	84.41	84.76
CDX86159	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	22.66	83.21
CDX88411	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	22.66	83.21
CDX91589	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	22.66	83.21
HORVU2Hr1G063740.6	Barley	peroxisome, vacuole	82.74	81.89
TraesCS2D01G262400.2	Wheat	cytosol	80.67	77.76
CDY12474	Canola	peroxisome, plastid	82.54	73.93
Bra009959.1-P	Field mustard	cytosol, peroxisome, plasma membrane	37.21	52.03
VIT_09s0002g00340.t01	Wine grape	mitochondrion	49.9	45.63
CDX86161	Canola	cytosol	6.44	23.48
VIT_11s0016g02560.t01	Wine grape	cytosol, nucleus, peroxisome	19.13	20.67
VIT_00s0840g00010.t01	Wine grape	cytosol	19.75	20.26
VIT_00s1437g00010.t01	Wine grape	cytosol	19.75	20.26
VIT_02s0025g00360.t01	Wine grape	cytosol	18.92	18.92
VIT_15s0046g02220.t01	Wine grape	cytosol	17.05	18.72
VIT_02s0234g00090.t01	Wine grape	cytosol	19.54	18.58
VIT_18s0001g08520.t01	Wine grape	nucleus	17.88	18.42
VIT_00s1764g00010.t01	Wine grape	cytosol	12.68	17.48
VIT_16s0022g02010.t01	Wine grape	cytosol	18.5	16.54
VIT_02s0025g04980.t01	Wine grape	cytosol, nucleus	10.39	2.88

Protein Annotations

MapMan:1.3.3.1	EntrezGene:100261274	wikigene:100261274	Gene3D:3.40.640.10	Gene3D:3.90.1150.10	ProteinID:AAZ43369
ProteinID:AAZ43369.1	EMBL:AM423437	InterPro:Aminotransferase_I/II	ProteinID:CAN62302	ProteinID:CAN62302.1	ProteinID:CBI23368
ProteinID:CBI23368.3	UniProt:D7SYR7	EMBL:DQ118095	EMBL:FN595256	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0030170	InterPro:IPR015421
InterPro:IPR015422	EntrezGene:LOC100261274	wikigene:LOC100261274	PFAM:PF00155	PANTHER:PTHR11751	PANTHER:PTHR11751:SF373
InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_Trfase_dom1	InterPro:PyrdxlP-dep_Trfase_major	SUPFAM:SSF53383	TIGR:TC51938	TIGR:TC53170
UniParc:UPI00015CD762	ArrayExpress:VIT_00s0225g00130	EnsemblPlantsGene:VIT_00s0225g00130	EnsemblPlants:VIT_00s0225g00130.t01	unigene:Vvi.8041	:

Description

No Description!

Coordinates

chrUn:-:14677776..14684475

Molecular Weight (calculated)

53276.3 Da

IEP (calculated)

6.715

GRAVY (calculated)

-0.178

Length

481 amino acids

Sequence
(BLAST)

001: MSHKGLDYET LNENVKKVQY AVRGELYLRA SELQKEGKKI IFTNVGNPHA LGQKPLTFPR QVVALCQAPF LLDDPNVGLV FPADAIARAK HYLSLTSGGL
101: GAYSDSRGLP GIRKEVAEFI GRRDGYPSDP ELIFLTDGAS KGVMQILNTI IRGERDGILV PVPQYPLYSA AISLFGGSLV PYYLEETANW GLDVNNLHSS
201: VAAARSKGIT VRAMVIINPG NPTGQCLSEA NLKEILHFCY QENLVLLGDE VYQQNIYQDE RPFISARKVL MDMGPPISKE LQLVSFHTVS KGYWGECGQR
301: GGYFEMTNIP PQTVDEIYKV ASISLSPNVP GQIFLGVMVN PPTPGDISYL QFMRESKGIL ESLKRRAQIM TDGFNSCRNV VCNFTEGAMY SFPQIRLPPK
401: AIEAAKKAGK VADVFYCLKL LEATGISTVP GSGFGQKEGV FHLRTTILPA EEDMPAIMES FKKFNDEFME QYEDHRGYSR M

Best Arabidopsis Sequence Match ( AT1G70580.4 )
(BLAST)

001: MSLKALDYES LNENVKNCQY AVRGELYLRA SELQKEGKKI IFTNVGNPHA LGQKPLTFPR QVVSLCQAPF LLDDPNVGMI FPADAIARAK HYLSLTSGGL
101: GAYSDSRGLP GVRKEVAEFI ERRDGYPSDP ELIFLTDGAS KGVMQILNCV IRGQKDGILV PVPQYPLYSA TISLLGGTLV PYYLEESENW GLDVNNLRQS
201: VAQARSQGIT VRAMVIINPG NPTGQCLSEA NIREILRFCC DERLVLLGDE VYQQNIYQDE RPFISSKKVL MDMGAPISKE VQLISFHTVS KGYWGECGQR
301: GGYFEMTNIP PRTVEEIYKV ASIALSPNVS AQIFMGLMVS PPKPGDISYD QFVRESKGIL ESLRRRARMM TDGFNSCKNV VCNFTEGAMY SFPQIKLPSK
401: AIQAAKQAGK VPDVFYCLKL LEATGISTVP GSGFGQKEGV FHLRTTILPA EEEMPEIMDS FKKFNDEFMS QYADNFGYSR M

Arabidopsis Description

GGAT2Glutamate--glyoxylate aminotransferase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9S7E9]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.