Factsheet for VIT_16s0022g02010.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400079664	Potato	golgi, mitochondrion, plastid	66.36	70.83
Solyc03g007070.2.1	Tomato	cytosol	67.84	68.22
KRH38710	Soybean	plastid	66.17	67.3
VIT_00s1764g00010.t01	Wine grape	cytosol	43.31	66.76
KRH09217	Soybean	plastid	64.5	65.72
AT5G51690.1	Thale cress	golgi, mitochondrion	60.04	65.25
Bra022560.1-P	Field mustard	mitochondrion, plastid	60.41	65.0
CDY46931	Canola	mitochondrion, plastid	60.41	65.0
CDX91604	Canola	mitochondrion, plastid	60.22	64.8
GSMUA_Achr5P13730_001	Banana	golgi, mitochondrion	58.92	63.02
HORVU7Hr1G053970.1	Barley	mitochondrion	9.11	62.82
GSMUA_Achr1P18880_001	Banana	golgi, mitochondrion	58.92	62.52
HORVU2Hr1G119710.1	Barley	mitochondrion	11.15	61.86
TraesCS7D01G060600.2	Wheat	golgi, mitochondrion	57.62	60.55
Os06t0130400-01	Rice	plasma membrane	57.99	57.56
Zm00001d045479_P001	Maize	cytosol, peroxisome, plastid	58.55	57.07
EER87775	Sorghum	plastid	58.36	56.78
TraesCS4A01G422900.1	Wheat	golgi	58.18	56.6
TraesCS7A01G066400.1	Wheat	cytosol, golgi, plastid	57.43	55.98
HORVU3Hr1G098750.1	Barley	cytosol, peroxisome	6.13	55.93
HORVU7Hr1G012940.1	Barley	cytosol	57.43	51.59
VIT_11s0016g02560.t01	Wine grape	cytosol, nucleus, peroxisome	37.36	45.17
GSMUA_Achr3P12300_001	Banana	mitochondrion	57.25	45.03
VIT_00s1437g00010.t01	Wine grape	cytosol	35.87	41.15
VIT_00s0840g00010.t01	Wine grape	cytosol	35.87	41.15
VIT_18s0001g08520.t01	Wine grape	nucleus	34.94	40.26
VIT_02s0025g00360.t01	Wine grape	cytosol	35.87	40.12
VIT_15s0046g02220.t01	Wine grape	cytosol	31.78	39.04
HORVU3Hr1G016440.3	Barley	cytosol	21.0	36.22
VIT_02s0234g00090.t01	Wine grape	cytosol	33.64	35.77
VIT_09s0002g00340.t01	Wine grape	mitochondrion	18.22	18.63
VIT_00s0225g00130.t01	Wine grape	cytosol	16.54	18.5
VIT_02s0025g04980.t01	Wine grape	cytosol, nucleus	36.06	11.18

Protein Annotations

EntrezGene:100251582	wikigene:100251582	Gene3D:3.40.640.10	Gene3D:3.90.1150.10	MapMan:50.4.4	EMBL:AM428459
InterPro:Aminotransferase_I/II	ProteinID:CAN66821	ProteinID:CAN66821.1	ProteinID:CCB49253	ProteinID:CCB49253.1	UniProt:F6HAJ6
EMBL:FN595506	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0016020	GO:GO:0016021	GO:GO:0030170	InterPro:IPR015421
InterPro:IPR015422	EntrezGene:LOC100251582	wikigene:LOC100251582	InterPro:NHTrfase_class1_PyrdxlP-BS	PFAM:PF00155	PRINTS:PR00753
ScanProsite:PS00105	PANTHER:PTHR43795	PANTHER:PTHR43795:SF7	InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_Trfase_dom1	InterPro:PyrdxlP-dep_Trfase_major
SUPFAM:SSF53383	TMHMM:TMhelix	UniParc:UPI00015CBBFE	ArrayExpress:VIT_16s0022g02010	EnsemblPlantsGene:VIT_16s0022g02010	EnsemblPlants:VIT_16s0022g02010.t01
unigene:Vvi.20732	RefSeq:XP_002268932	RefSeq:XP_002268932.1	RefSeq:XP_002268932.2	SEG:seg	:

Description

No Description!

Coordinates

chr16:-:14302997..14307152

Molecular Weight (calculated)

59058.0 Da

IEP (calculated)

8.511

GRAVY (calculated)

-0.149

Length

538 amino acids

Sequence
(BLAST)

001: MNHSRSRRNP TREPDFPTAK PPSPGGSSGG GAGAAMRLIV PLQGVVQGRG GLILGSVIPG ALYYFFQLYL KRCRSAKPNS NPPSPSSSSA QLADLSRSSS
101: RSNLSSRGSV GPVRVSARAN SIAKPNASPY YIGLERASED PYDRFDNPDG IMQLGLSENR LSLDLIETWI LENLERSMIG GADGNLNISG IATYQPLDGM
201: MEMKIAVAGF MSQVMGTTVS FDPSRLVLTS GATPAIETLC FCLADQGNAF LVPTPYYPGF DRDMKWRTGV ELIPVHCRSS DNFALSVTAL DQAFNQARKR
301: GQRVRGILIS NPSNPIGNML NKETLYSLLD FAREKNIHII SDEIFAGSTY GSEEFVSMAE ILESEDFDKD RVHIIYGLSK DLSLPGFRVG VIYSFNTSVL
401: AAAKKLARFS SVSAPTQRIL ISMLSDTRFI QRYIETTRER IQKMYVAFAA GLKQLGIECT KSSAGLYCWA DMSGLIRPYN EKGELELWDK LLKIGKINVT
501: PGSACHCIEP GWFRCCFTML AEEDIPVVIK RIQRVVET

Best Arabidopsis Sequence Match ( AT5G51690.1 )
(BLAST)

001: MRLIVPLRGV IQGRGGLFVG SLIPCCLFYF LQLYLKRRRP PPSDPTDLPR TFSRTNLFSR GNSIGRVRVS SRAVPVAKPS DSPYYIGLER VKTDPYDRIT
101: NTDGIIQLGL AESTLCFDLL QRWMSENLME SMMQSDDGEF DISSIAMYKP FEGLLELRVA FADFMSRIMG GNVSFDPSNM VITAGGTPAI EVLAFCLADH
201: GNAFLIPTPY YPGFDRDIKF RTGVELIPVH CRSSDNFTVT VSALEQALNQ ARKRGSKVSG ILFSNPSNPV GNILSRETLC DILRFAQEKN IHVISDEIFA
301: GSVYGDKEFV SMAEIAGSGE FDKTRVHIIY GLSKDLSIPG FRAGVIYSFH EDVVNAAKKL MRFSSVPVLV QRILISLLSD VRFIEGYMAA HRQRIRDKHI
401: RFVEGLKQLG IPCAESGGGL YCWVDMSSLL TSYSEKGELE LFEKLLTVAK INATPGTACY CIEPGWFRCC FTALADEDIP VIMERIRQLA ESFRS

Arabidopsis Description

ACS12Probable aminotransferase ACS12 [Source:UniProtKB/Swiss-Prot;Acc:Q8GYY0]
SUBAcon: [mitochondrion,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.