Factsheet for VIT_15s0046g02220.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH65284	Soybean	cytosol	19.18	68.29
KRH00855	Soybean	cytosol	73.06	66.67
VIT_02s0025g00360.t01	Wine grape	cytosol	72.83	66.32
KRH40379	Soybean	cytosol	71.69	64.74
CDX90035	Canola	cytosol	65.3	63.98
KRH06585	Soybean	cytosol	68.95	63.71
KRH48058	Soybean	cytosol	68.95	63.71
PGSC0003DMT400000553	Potato	cytosol	68.04	61.32
Solyc01g095080.2.1	Tomato	cytosol	67.58	61.03
PGSC0003DMT400084228	Potato	cytosol	24.2	60.57
CDY15174	Canola	cytosol	67.81	59.88
GSMUA_AchrUn_...	Banana	cytosol	59.59	58.92
Bra033261.1-P	Field mustard	cytosol	66.89	58.72
AT1G01480.1	Thale cress	cytosol	66.44	58.67
GSMUA_Achr4P24930_001	Banana	cytosol	63.24	57.59
GSMUA_Achr4P29150_001	Banana	cytosol	62.79	56.58
Solyc05g050010.2.1	Tomato	cytosol	59.36	54.62
EES12700	Sorghum	cytosol	60.5	53.97
TraesCS2A01G396400.1	Wheat	cytosol	59.82	53.91
TraesCS2B01G414800.1	Wheat	cytosol	59.82	53.91
TraesCS2D01G394200.1	Wheat	cytosol	59.82	53.91
Zm00001d002592_P002	Maize	cytosol	59.13	53.4
Os04t0578000-01	Rice	cytosol	58.68	53.21
VIT_11s0016g02560.t01	Wine grape	cytosol, nucleus, peroxisome	53.65	52.81
Zm00001d026060_P003	Maize	cytosol	59.13	50.78
VIT_00s1437g00010.t01	Wine grape	cytosol	54.11	50.53
VIT_00s0840g00010.t01	Wine grape	cytosol	54.11	50.53
PGSC0003DMT400055753	Potato	vacuole	39.95	46.05
VIT_18s0001g08520.t01	Wine grape	nucleus	47.95	44.97
VIT_00s1764g00010.t01	Wine grape	cytosol	33.56	42.12
VIT_02s0234g00090.t01	Wine grape	cytosol	47.72	41.3
HORVU2Hr1G094230.2	Barley	cytosol	44.52	40.29
VIT_16s0022g02010.t01	Wine grape	cytosol	39.04	31.78
VIT_00s0225g00130.t01	Wine grape	cytosol	18.72	17.05
VIT_09s0002g00340.t01	Wine grape	mitochondrion	19.86	16.54
VIT_02s0025g04980.t01	Wine grape	cytosol, nucleus	18.49	4.67

Protein Annotations

EntrezGene:100261943	wikigene:100261943	MapMan:11.5.1.1	Gene3D:3.40.640.10	Gene3D:3.90.1150.10	EMBL:AM439310
InterPro:Aminotransferase_I/II	ProteinID:CAN69483	ProteinID:CAN69483.1	ProteinID:CBI40404	ProteinID:CBI40404.3	ncoils:Coil
UniProt:D7UCD9	EMBL:FN596755	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016847	GO:GO:0030170	InterPro:IPR015421
InterPro:IPR015422	EntrezGene:LOC100261943	wikigene:LOC100261943	InterPro:NHTrfase_class1_PyrdxlP-BS	PFAM:PF00155	PRINTS:PR00753
ScanProsite:PS00105	PANTHER:PTHR43795	PANTHER:PTHR43795:SF25	InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_Trfase_dom1	InterPro:PyrdxlP-dep_Trfase_major
SUPFAM:SSF53383	UniParc:UPI0001BE54FD	ArrayExpress:VIT_15s0046g02220	EnsemblPlantsGene:VIT_15s0046g02220	EnsemblPlants:VIT_15s0046g02220.t01	unigene:Vvi.20725
RefSeq:XP_002276774	RefSeq:XP_002276774.2	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr15:+:19001999..19004662

Molecular Weight (calculated)

49359.4 Da

IEP (calculated)

6.928

GRAVY (calculated)

-0.100

Length

438 amino acids

Sequence
(BLAST)

001: MGLAENQLSF NLMEEWILKN PKASICTPEG ISQFKDVAIF QDYHGLTQFR NAVAKFMAKA RGGRVKFDPD RIVMSGGATG ADEMIMFCLA DPGEAFLVPS
101: PYYPAFDRDL RWRTQVKIRP VECTSANNFQ ITREALEAAY QKAQEENIKV KGLIITNPSN PLGTTLSRET LTSLVSFINE KNIHLVADEI YAATVFSSPR
201: FVSVSEIMDE VECNPNLIHI VYSLSKDLGL PGFRVGIVYS YNDAVVSCGR KMSSFGLVSS QTQHLLASML SDDEFVDNFL MESSRRLAKR HKTFTEGLVN
301: VNINCLKSNA GLFVWMDLRH LLKEPTLEGE IALWRVIIKD VKLNVSPGSS FQCSEPGWFR VCFANMDEDT VEVALKRIRT FVGKGQEEAE APTKAKRWKN
401: STLRLSFSSR IYDEAVMSPH SPMPHSPLLF VFIVFYFY

Best Arabidopsis Sequence Match ( AT3G61510.1 )
(BLAST)

001: MSQGACENQL LSKLALSDKH GEASPYFHGW KAYDNNPFHP THNPQGVIQM GLAENQLCSD LIKEWIKENP QASICTAEGI DSFSDIAVFQ DYHGLKQFRQ
101: AIATFMERAR GGRVRFEAER VVMSGGATGA NETIMFCLAD PGDAFLVPTP YYAAFDRDLR WRTGVRIIPV ECSSSNNFQI TKQALESAYL KAQETGIKIK
201: GLIISNPLGT SLDRETLESL VSFINDKQIH LVCDEIYAAT VFAEPGFISV AEIIQEMYYV NRDLIHIVYS LSKDMGLPGF RVGVVYSYND VVVSCARRMS
301: SFGLVSSQTQ SFLAAMLSDQ SFVDNFLVEV SKRVAKRHHM FTEGLEEMGI SCLRSNAGLF VLMDLRHMLK DQTFDSEMAL WRVIINKVKI NVSPGSSFHC
401: SEPGWFRVCF ANMDEDTLQI ALERIKDFVV GDRANKNKNC NCICNNKREN KKRKSFQKNL KLSLSSMRYE EHVRSPKLMS PHSPLLRA

Arabidopsis Description

ACS11-aminocyclopropane-1-carboxylate synthase-like protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q06429]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.