CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH02667
KRH12454
KRH19237
KRH37441

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G01480.1	KRH02667	AT4G26080.1	19705149
AT1G01480.1	KRH12454	AT4G26080.1	19705149
AT1G01480.1	KRH19237	AT4G26080.1	19705149
AT1G01480.1	KRH37441	AT4G26080.1	19705149

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH40379	Soybean	cytosol	97.5	96.49
KRH65284	Soybean	cytosol	21.25	82.93
KRH06585	Soybean	cytosol	79.58	80.59
KRH48058	Soybean	cytosol	79.17	80.17
VIT_15s0046g02220.t01	Wine grape	cytosol	66.67	73.06
Solyc01g095080.2.1	Tomato	cytosol	70.21	69.48
PGSC0003DMT400000553	Potato	cytosol	70.21	69.34
KRH41241	Soybean	cytosol	68.96	68.39
KRH59970	Soybean	cytosol	68.54	67.98
KRH27892	Soybean	cytosol	67.92	67.92
GSMUA_Achr4P29150_001	Banana	cytosol	65.0	64.2
CDY15174	Canola	cytosol	65.83	63.71
GSMUA_AchrUn_...	Banana	cytosol	58.75	63.66
GSMUA_Achr4P24930_001	Banana	cytosol	63.33	63.2
Bra033261.1-P	Field mustard	cytosol	65.42	62.93
TraesCS2A01G396400.1	Wheat	cytosol	63.12	62.35
TraesCS2B01G414800.1	Wheat	cytosol	63.12	62.35
TraesCS2D01G394200.1	Wheat	cytosol	63.12	62.35
CDX90035	Canola	cytosol	57.92	62.19
AT1G01480.1	Thale cress	cytosol	64.17	62.1
EES12700	Sorghum	cytosol	63.33	61.91
Solyc05g050010.2.1	Tomato	cytosol	61.25	61.76
Zm00001d002592_P002	Maize	cytosol	62.08	61.44
Os04t0578000-01	Rice	cytosol	61.67	61.28
Zm00001d026060_P003	Maize	cytosol	62.08	58.43
PGSC0003DMT400084228	Potato	cytosol	21.25	58.29
KRH60148	Soybean	cytosol	49.58	54.09
KRH41440	Soybean	cytosol	48.96	53.41
KRH74169	Soybean	cytosol	49.58	53.36
KRH49039	Soybean	cytosol	48.96	52.69
PGSC0003DMT400055753	Potato	vacuole	41.25	52.11
KRH04373	Soybean	cytosol	49.38	49.89
KRH61460	Soybean	cytosol	36.25	49.71
KRH77167	Soybean	cytosol	48.54	49.57
KRH28319	Soybean	cytosol	48.33	49.26
KRH58165	Soybean	cytosol	48.96	48.96
HORVU2Hr1G094230.2	Barley	cytosol	49.17	48.76
KRH52156	Soybean	cytosol	45.42	46.68
KRH77442	Soybean	endoplasmic reticulum, mitochondrion, plasma membrane, plastid	35.0	33.47
KRH27993	Soybean	endoplasmic reticulum, golgi, mitochondrion, plastid	34.79	33.33
KRH38710	Soybean	plastid	35.42	32.14
KRH09217	Soybean	plastid	35.21	32.01
KRH74536	Soybean	cytosol	21.04	21.0
KRH69622	Soybean	cytosol	20.42	20.37
KRH06285	Soybean	mitochondrion	20.42	18.28
KRH47719	Soybean	endoplasmic reticulum	20.42	18.11

Protein Annotations

EntrezGene:100775969	MapMan:11.5.1.1	Gene3D:3.40.640.10	Gene3D:3.90.1150.10	EMBL:ACUP02011479	InterPro:Aminotransferase_I/II
EnsemblPlantsGene:GLYMA_18G238100	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0030170	UniProt:I1N3V1	InterPro:IPR015421	InterPro:IPR015422	EnsemblPlants:KRH00855
ProteinID:KRH00855	ProteinID:KRH00855.1	InterPro:NHTrfase_class1_PyrdxlP-BS	PFAM:PF00155	PRINTS:PR00753	ScanProsite:PS00105
PANTHER:PTHR43795	PANTHER:PTHR43795:SF25	InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_Trfase_dom1	InterPro:PyrdxlP-dep_Trfase_major	SUPFAM:SSF53383
UniParc:UPI000233E423	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr18:-:52690346..52694060

Molecular Weight (calculated)

54209.9 Da

IEP (calculated)

7.933

GRAVY (calculated)

-0.278

Length

480 amino acids

Sequence
(BLAST)

001: MALGNNSHQL LSKIATNDKH GENSPYFDGW KAYDSNPFHP TKNPQGVIQM GLAENQLCFD LIQEWIRNNP KASICTAEGV NQFKYIANFQ DYHGLPEFRN
101: AVANFMSKVR GGRVRFDPDR ILMSGGATGA NELIMFCLAD PGDAFLVPSP YYPAFVRDLC WRTRTQLIPV ECHSSNNFKI TREALEEAYE KAKEGNINVK
201: GLIITNPSNP LGTTLDRETL KSIVGFINEK NIHLVCDEIY AATVFRAPSF VSVSEVMQDI EHCKKDLIHI IYSLSKDLGL PGFRVGIVYS YNDEVVNSGR
301: KMSSFGLVSS QTQYFLAALL SDDEFVERFL AESARRLAAR HSHFTKGLEK VNITCLPSNA GLFFWMNLRG LLKEKTFEGE MMLWRVIINE VKLNVSPGSA
401: FNCSEPGWYR VCFANMDDET VDVALMRIRA FVGKETGKPP KELKRWKSNL RLSFSNSRRF DENVMSPHSP MPHSPLVRAT

Best Arabidopsis Sequence Match ( AT3G61510.1 )
(BLAST)

001: MSQGACENQL LSKLALSDKH GEASPYFHGW KAYDNNPFHP THNPQGVIQM GLAENQLCSD LIKEWIKENP QASICTAEGI DSFSDIAVFQ DYHGLKQFRQ
101: AIATFMERAR GGRVRFEAER VVMSGGATGA NETIMFCLAD PGDAFLVPTP YYAAFDRDLR WRTGVRIIPV ECSSSNNFQI TKQALESAYL KAQETGIKIK
201: GLIISNPLGT SLDRETLESL VSFINDKQIH LVCDEIYAAT VFAEPGFISV AEIIQEMYYV NRDLIHIVYS LSKDMGLPGF RVGVVYSYND VVVSCARRMS
301: SFGLVSSQTQ SFLAAMLSDQ SFVDNFLVEV SKRVAKRHHM FTEGLEEMGI SCLRSNAGLF VLMDLRHMLK DQTFDSEMAL WRVIINKVKI NVSPGSSFHC
401: SEPGWFRVCF ANMDEDTLQI ALERIKDFVV GDRANKNKNC NCICNNKREN KKRKSFQKNL KLSLSSMRYE EHVRSPKLMS PHSPLLRA

Arabidopsis Description

ACS11-aminocyclopropane-1-carboxylate synthase-like protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q06429]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.