Factsheet for Solyc05g050010.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	cytosol
EpiLoc:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g095080.2.1
Solyc05g050010.2.1
Solyc08g008100.2.1
Solyc08g081540.2.1
Solyc08g081550.2.1
Solyc12g056180.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G61510.1	Solyc01g095080.2.1	AT3G61510.1	14983000
AT3G61510.1	Solyc05g050010.2.1	AT3G61510.1	14983000
AT3G61510.1	Solyc08g008100.2.1	AT4G11280.1	14983000
AT3G61510.1	Solyc08g081540.2.1	AT4G11280.1	14983000
AT3G61510.1	Solyc08g081550.2.1	AT4G11280.1	14983000
AT3G61510.1	Solyc12g056180.1.1	AT4G11280.1	14983000

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400084228	Potato	cytosol	27.94	76.0
Solyc01g095080.2.1	Tomato	cytosol	68.7	67.42
Solyc08g008110.2.1	Tomato	cytosol, nucleus	14.29	67.33
PGSC0003DMT400055753	Potato	vacuole	51.05	63.95
Solyc08g081540.2.1	Tomato	cytosol	63.66	62.73
KRH65284	Soybean	cytosol	16.18	62.6
Solyc08g081550.2.1	Tomato	cytosol	61.34	61.86
KRH48058	Soybean	cytosol	61.34	61.6
KRH06585	Soybean	cytosol	61.13	61.39
Solyc12g056180.1.1	Tomato	cytosol	60.92	61.31
KRH00855	Soybean	cytosol	61.76	61.25
GSMUA_AchrUn_...	Banana	cytosol	56.93	61.17
VIT_15s0046g02220.t01	Wine grape	cytosol	54.62	59.36
KRH40379	Soybean	cytosol	60.29	59.18
AT3G61510.1	Thale cress	cytosol	60.5	59.02
Bra007611.1-P	Field mustard	cytosol	58.4	58.77
CDY11360	Canola	cytosol	58.4	58.77
CDY65356	Canola	cytosol	57.98	58.35
Zm00001d002592_P002	Maize	cytosol	59.45	58.35
EES12700	Sorghum	cytosol	59.45	57.64
TraesCS2D01G394200.1	Wheat	cytosol	58.82	57.61
TraesCS2B01G414800.1	Wheat	cytosol	58.82	57.61
TraesCS2A01G396400.1	Wheat	cytosol	58.82	57.61
GSMUA_Achr4P24930_001	Banana	cytosol	58.19	57.59
GSMUA_Achr4P29150_001	Banana	cytosol	58.61	57.41
Os04t0578000-01	Rice	cytosol	57.35	56.52
Zm00001d026060_P003	Maize	cytosol	59.03	55.1
Solyc12g008740.1.1	Tomato	cytosol	50.21	55.07
Solyc08g008100.2.1	Tomato	nucleus	41.18	53.7
Solyc07g026900.1.1	Tomato	cytosol	49.37	53.29
Solyc02g063540.1.1	Tomato	cytosol	31.72	53.17
Solyc02g091990.2.1	Tomato	cytosol	49.16	49.89
Solyc04g077410.2.1	Tomato	cytosol	48.32	48.83
Solyc03g043890.2.1	Tomato	cytosol	48.32	48.83
HORVU2Hr1G094230.2	Barley	cytosol	47.06	46.28
Solyc03g007070.2.1	Tomato	cytosol	37.18	33.08
Solyc08g079750.2.1	Tomato	plastid	37.6	32.66
Solyc01g007940.2.1	Tomato	cytosol	19.54	19.66
Solyc03g123600.2.1	Tomato	cytosol	18.91	18.59
Solyc05g013380.2.1	Tomato	extracellular, nucleus, plastid	18.49	18.3
Solyc06g063090.2.1	Tomato	extracellular	19.33	16.97
Solyc03g123610.2.1	Tomato	plastid	18.49	14.52

Protein Annotations

MapMan:11.5.1.1	Gene3D:3.40.640.10	Gene3D:3.90.1150.10	InterPro:Aminotransferase_I/II	ProteinID:CAH56504.1	GO:GO:0000003
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009693	GO:GO:0009835	GO:GO:0009987	GO:GO:0016829	GO:GO:0016847
GO:GO:0030170	GO:GO:0042218	InterPro:IPR015421	InterPro:IPR015422	InterPro:NHTrfase_class1_PyrdxlP-BS	PFAM:PF00155
PRINTS:PR00753	ScanProsite:PS00105	PANTHER:PTHR43795	PANTHER:PTHR43795:SF25	InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_Trfase_dom1
InterPro:PyrdxlP-dep_Trfase_major	UniProt:Q659H5	SUPFAM:SSF53383	EnsemblPlantsGene:Solyc05g050010.2	EnsemblPlants:Solyc05g050010.2.1	UniParc:UPI000016DDF7
SEG:seg	:	:	:	:	:

Description

1-aminocyclopropane-1-carboxylate synthase [Source:UniProtKB/TrEMBL;Acc:Q659H5]

Coordinates

chr5:+:59888702..59891616

Molecular Weight (calculated)

53522.1 Da

IEP (calculated)

5.534

GRAVY (calculated)

-0.214

Length

476 amino acids

Sequence
(BLAST)

001: MDLETSEISN YKSSAVLSKL ASNEQHGENS PYFDGWKAYD NDPFHLVNNL NGVIQMGLAE NQLSVDLIEE WIKRNPKASI CTNDGIESFR RIANFQDYHG
101: LPEFTNAIAK FMEKTRGGKV KFDAKRVVMA GGATGANETL ILCLADPGDA FLVPTPYYPG FNRDLRWRSG VQLLPISCKS CNNFKITIEA IEEAYEKGQQ
201: ANVKIKGLIL TNPCNPLGTI LDRDTLKKIS TFTNEHNIHL VCDEIYAATV FNPPKFVSIA EIINEDNCIN KDLVHIVSSL SKDLGFPGFR VGIVYSFNDD
301: VVNCARKMSS FGLVSTQTQH LLAFMLSDDE FVEEFLIESA KRLRERYEKF TRGLEEIGIK CLESNAGVYC WMDLRSLLKE ATLDAEMSLW KLIINEVKLN
401: VSPGSSFNCS EVGWFRVCFA NIDDQTMEIA LARIRMFMDA YNNVNKNGVM KNKHNGRGTT YDLTPQMGST MKMLLA

Best Arabidopsis Sequence Match ( AT3G61510.1 )
(BLAST)

001: MSQGACENQL LSKLALSDKH GEASPYFHGW KAYDNNPFHP THNPQGVIQM GLAENQLCSD LIKEWIKENP QASICTAEGI DSFSDIAVFQ DYHGLKQFRQ
101: AIATFMERAR GGRVRFEAER VVMSGGATGA NETIMFCLAD PGDAFLVPTP YYAAFDRDLR WRTGVRIIPV ECSSSNNFQI TKQALESAYL KAQETGIKIK
201: GLIISNPLGT SLDRETLESL VSFINDKQIH LVCDEIYAAT VFAEPGFISV AEIIQEMYYV NRDLIHIVYS LSKDMGLPGF RVGVVYSYND VVVSCARRMS
301: SFGLVSSQTQ SFLAAMLSDQ SFVDNFLVEV SKRVAKRHHM FTEGLEEMGI SCLRSNAGLF VLMDLRHMLK DQTFDSEMAL WRVIINKVKI NVSPGSSFHC
401: SEPGWFRVCF ANMDEDTLQI ALERIKDFVV GDRANKNKNC NCICNNKREN KKRKSFQKNL KLSLSSMRYE EHVRSPKLMS PHSPLLRA

Arabidopsis Description

ACS11-aminocyclopropane-1-carboxylate synthase-like protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q06429]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.