CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 4
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH02667
KRH12454
KRH19237
KRH37441

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G01480.1	KRH02667	AT4G26080.1	19705149
AT1G01480.1	KRH12454	AT4G26080.1	19705149
AT1G01480.1	KRH19237	AT4G26080.1	19705149
AT1G01480.1	KRH37441	AT4G26080.1	19705149

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH40379	Soybean	cytosol	84.55	21.44
KRH00855	Soybean	cytosol	82.93	21.25
VIT_15s0046g02220.t01	Wine grape	cytosol	68.29	19.18
CDX90035	Canola	cytosol	67.48	18.57
KRH48058	Soybean	cytosol	68.29	17.72
KRH06585	Soybean	cytosol	68.29	17.72
PGSC0003DMT400000553	Potato	cytosol	68.29	17.28
Solyc01g095080.2.1	Tomato	cytosol	67.48	17.11
KRH59970	Soybean	cytosol	65.85	16.74
KRH41241	Soybean	cytosol	65.85	16.74
CDY15174	Canola	cytosol	67.48	16.73
Bra033261.1-P	Field mustard	cytosol	67.48	16.63
GSMUA_Achr4P24930_001	Banana	cytosol	64.23	16.42
GSMUA_AchrUn_...	Banana	cytosol	58.54	16.25
Solyc05g050010.2.1	Tomato	cytosol	62.6	16.18
Os04t0578000-01	Rice	cytosol	63.41	16.15
GSMUA_Achr4P29150_001	Banana	cytosol	63.41	16.05
KRH27892	Soybean	cytosol	61.79	15.83
AT1G01480.1	Thale cress	cytosol	63.41	15.73
TraesCS2D01G394200.1	Wheat	cytosol	60.98	15.43
TraesCS2B01G414800.1	Wheat	cytosol	60.98	15.43
TraesCS2A01G396400.1	Wheat	cytosol	60.98	15.43
EES12700	Sorghum	cytosol	59.35	14.87
Zm00001d002592_P002	Maize	cytosol	57.72	14.64
HORVU2Hr1G094230.2	Barley	cytosol	56.1	14.26
Zm00001d026060_P003	Maize	cytosol	58.54	14.12
PGSC0003DMT400055753	Potato	vacuole	41.46	13.42
KRH60148	Soybean	cytosol	47.15	13.18
KRH41440	Soybean	cytosol	47.15	13.18
KRH74169	Soybean	cytosol	47.15	13.0
KRH49039	Soybean	cytosol	46.34	12.78
KRH77167	Soybean	cytosol	47.97	12.55
KRH28319	Soybean	cytosol	47.15	12.31
KRH04373	Soybean	cytosol	45.53	11.79
KRH58165	Soybean	cytosol	44.72	11.46
KRH52156	Soybean	cytosol	40.65	10.71
KRH61460	Soybean	cytosol	29.27	10.29
KRH09217	Soybean	plastid	42.28	9.85
KRH38710	Soybean	plastid	42.28	9.83
KRH27993	Soybean	endoplasmic reticulum, golgi, mitochondrion, plastid	37.4	9.18
KRH77442	Soybean	endoplasmic reticulum, mitochondrion, plasma membrane, plastid	36.59	8.96
KRH74536	Soybean	cytosol	21.95	5.61
KRH69622	Soybean	cytosol	21.95	5.61
PGSC0003DMT400084228	Potato	cytosol	7.32	5.14
KRH06285	Soybean	mitochondrion	19.51	4.48
KRH47719	Soybean	endoplasmic reticulum	19.51	4.44

Protein Annotations

Gene3D:3.40.640.10	MapMan:50.4.4	EMBL:ACUP02001326	InterPro:Aminotransferase_I/II	EnsemblPlantsGene:GLYMA_03G025100	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0030170
InterPro:IPR015421	UniProt:K7KCF6	EnsemblPlants:KRH65284	ProteinID:KRH65284	ProteinID:KRH65284.1	PFAM:PF00155
PRINTS:PR00753	PANTHER:PTHR43795	PANTHER:PTHR43795:SF25	InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_Trfase_major	SUPFAM:SSF53383
UniParc:UPI0002960B14	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr3:+:2719352..2719869

Molecular Weight (calculated)

13855.5 Da

IEP (calculated)

6.508

GRAVY (calculated)

-0.128

Length

123 amino acids

Sequence
(BLAST)

001: MIQEWIRNNP KASICTAEGV NQFKYIANFQ DYHGLPEFRN AVANFMSEVR GGRVRFDPDR ILMSGGATGA NELIMFCLAD AGDAFLVPSL YYPAYVPSLS
101: SRLFSFNESH YFTPIKTLKV DTN

Best Arabidopsis Sequence Match ( AT1G01480.1 )
(BLAST)

001: MGLPGKNKGA VLSKIATNNQ HGENSEYFDG WKAYDKDPFH LSRNPHGIIQ MGLAENQLCL DLIKDWVKEN PEASICTLEG IHQFSDIANF QDYHGLKKFR
101: QAIAHFMGKA RGGRVTFDPE RVVMSGGATG ANETIMFCLA DPGDVFLIPS PYYAAFDRDL RWRTGVEIIP VPCSSSDNFK LTVDAAEWAY KKAQESNKKV
201: KGLILTNPSN PLGTMLDKDT LTNLVRFVTR KNIHLVVDEI YAATVFAGGD FVSVAEVVND VDISEVNVDL IHIVYSLSKD MGLPGFRVGI VYSFNDSVVS
301: CARKMSSFGL VSSQTQLMLA SMLSDDQFVD NFLMESSRRL GIRHKVFTTG IKKADIACLT SNAGLFAWMD LRHLLRDRNS FESEIELWHI IIDRVKLNVS
401: PGSSFRCTEP GWFRICFANM DDDTLHVALG RIQDFVSKNK NKIVEKASEN DQVIQNKSAK KLKWTQTNLR LSFRRLYEDG LSSPGIMSPH SPLLRA

Arabidopsis Description

ACS21-aminocyclopropane-1-carboxylate synthase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q06402]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.