CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

plastid 4
cytosol 1
mitochondrion 6

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
endoplasmic reticulum: 27224218
mitochondrion: 27780359
endoplasmic reticulum: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 27780359 doi

G Mustafa, S Komatsu

Graduate School of Life and Environmental Science, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH06285	Soybean	mitochondrion	96.3	97.2
PGSC0003DMT400012549	Potato	cytosol, mitochondrion	75.23	83.57
Os07t0617800-01	Rice	mitochondrion	49.54	81.46
VIT_09s0002g00340.t01	Wine grape	mitochondrion	78.19	80.42
GSMUA_Achr2P07320_001	Banana	cytosol	72.09	80.08
Zm00001d003953_P001	Maize	cytosol	13.12	79.78
Zm00001d030557_P001	Maize	cytosol, extracellular	70.24	78.84
TraesCS1D01G086700.1	Wheat	cytosol	57.86	77.86
Solyc03g123600.2.1	Tomato	cytosol	69.5	77.69
TraesCS1A01G085600.1	Wheat	cytosol, golgi	69.13	77.59
TraesCS1B01G102700.1	Wheat	golgi, plastid	69.13	77.59
GSMUA_Achr11P...	Banana	mitochondrion	72.64	77.36
Solyc06g063090.2.1	Tomato	extracellular	77.45	77.31
Os10t0390500-01	Rice	cytosol, plasma membrane, plastid	68.76	77.02
KXG38638	Sorghum	cytosol	70.24	76.92
GSMUA_Achr10P...	Banana	mitochondrion	73.57	76.1
Bra025984.1-P	Field mustard	cytosol, mitochondrion	75.42	75.98
CDY48485	Canola	plastid	75.42	75.56
CDY21752	Canola	mitochondrion	76.34	75.5
CDY26256	Canola	mitochondrion	74.86	75.42
CDX81815	Canola	mitochondrion	76.34	75.23
Bra026675.1-P	Field mustard	mitochondrion	76.16	75.18
AT1G17290.1	Thale cress	mitochondrion	75.42	75.14
CDX83914	Canola	mitochondrion	75.05	75.05
Zm00001d044135_P001	Maize	cytosol	7.76	75.0
CDX96776	Canola	mitochondrion	74.31	74.17
Bra016607.1-P	Field mustard	mitochondrion	74.31	74.17
AT1G72330.3	Thale cress	mitochondrion	75.79	74.14
EER99708	Sorghum	mitochondrion	73.01	73.01
Zm00001d022152_P001	Maize	mitochondrion	72.46	72.46
Os03t0183600-00	Rice	extracellular	62.85	69.96
TraesCS2A01G167500.1	Wheat	mitochondrion	70.43	68.53
TraesCS2D01G175200.1	Wheat	golgi	70.43	68.4
TraesCS2B01G193600.1	Wheat	mitochondrion	70.43	67.91
HORVU2Hr1G030820.1	Barley	mitochondrion	69.69	67.68
Solyc03g123610.2.1	Tomato	plastid	74.31	66.34
Zm00001d006875_P001	Maize	plastid	68.02	65.83
HORVU1Hr1G018540.17	Barley	cytosol, golgi, plastid	67.47	64.83
Zm00001d032984_P001	Maize	mitochondrion	30.87	51.07
KRH74536	Soybean	cytosol	43.99	49.48
KRH69622	Soybean	cytosol	43.62	49.06
Zm00001d014258_P002	Maize	cytosol	69.32	42.42
Zm00001d008277_P001	Maize	cytosol	27.36	34.74
KRH61460	Soybean	cytosol	13.86	21.43
KRH41440	Soybean	cytosol	17.01	20.91
KRH60148	Soybean	cytosol	16.82	20.68
KRH49039	Soybean	cytosol	17.01	20.63
KRH04373	Soybean	cytosol	17.93	20.42
KRH00855	Soybean	cytosol	18.11	20.42
KRH58165	Soybean	cytosol	18.11	20.42
KRH41241	Soybean	cytosol	18.11	20.25
KRH77167	Soybean	cytosol	17.56	20.21
KRH74169	Soybean	cytosol	16.64	20.18
KRH28319	Soybean	cytosol	17.56	20.17
KRH59970	Soybean	cytosol	17.74	19.83
KRH40379	Soybean	cytosol	17.74	19.79
KRH48058	Soybean	cytosol	17.19	19.62
KRH27892	Soybean	cytosol	17.38	19.58
KRH65284	Soybean	cytosol	4.44	19.51
KRH52156	Soybean	cytosol	16.82	19.49
KRH06585	Soybean	cytosol	16.82	19.2
KRH09217	Soybean	plastid	17.19	17.61
KRH38710	Soybean	plastid	17.19	17.58
KRH27993	Soybean	endoplasmic reticulum, golgi, mitochondrion, plastid	15.9	17.17
KRH77442	Soybean	endoplasmic reticulum, mitochondrion, plasma membrane, plastid	15.16	16.33
Os10t0390701-00	Rice	cytosol	1.66	8.33

Protein Annotations

EntrezGene:100776235	Gene3D:3.40.640.10	Gene3D:3.90.1150.10	MapMan:4.1.3.1.1	EMBL:ACUP02004161	InterPro:Aminotransferase_I/II
ncoils:Coil	EnsemblPlantsGene:GLYMA_07G045900	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0008150
GO:GO:0008152	GO:GO:0008483	GO:GO:0009058	GO:GO:0016740	GO:GO:0030170	UniProt:I1KHJ4
InterPro:IPR015421	InterPro:IPR015422	EnsemblPlants:KRH47719	ProteinID:KRH47719	ProteinID:KRH47719.1	PFAM:PF00155
PANTHER:PTHR11751	PANTHER:PTHR11751:SF466	InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_Trfase_dom1	InterPro:PyrdxlP-dep_Trfase_major	SUPFAM:SSF53383
UniParc:UPI0002337BEF	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr7:-:3827387..3833377

Molecular Weight (calculated)

59913.5 Da

IEP (calculated)

6.823

GRAVY (calculated)

-0.264

Length

541 amino acids

Sequence
(BLAST)

001: MRKYAADRFR HLFNRSLLLL RHRHHHNHHP FPYSSSVSSL SPFSRSRFLS STPFSMASDS PFPVTAQNIN PKVLKCEYAV RGEVVTLAQN LQKDLQANPG
101: SHPFDEILYC NIGNPQSLGQ QPITFFREVL ALCDHPAILD KSETQGLFST DAIQRAWQIV DQIPGRATGA YSHSQGVKGL RDTIAAGIEE RDGFPANPDD
201: IFMTDGASPA VHNMMQLLIR SENDGILCPI PQYPLYSASI ALHGGCLVPY YLDEATGWGL EIPELKKQLE AAKSKGINVR ALVVINPGNP TGQVLGEANQ
301: RDIVEFCKQE GLVLLADEVY QENVYVPEKK FHSFKKVSRS MGYGENDITL VSFQSVSKGY HGECGKRGGY MEVTGFSAEV REQIYKVASV NLCSNISGQI
401: LASLVMSPPK VGDESYDSFM AEKENILASL ARRAKTLEDA FNKLEGVTCN KAEGAMYLFP QIRLSEKAIK AAEAANATPD NFYCKRLLNA TGVVVVPGSG
501: FGQVPGTWHF RCTILPPEEK IPAIVTRLTE FHEKFMDEFR D

Best Arabidopsis Sequence Match ( AT1G72330.1 )
(BLAST)

001: MRRFLINQAK GLVDHSRRQH HHKSPSFLSP QPRPLASSPP ALSRFFSSTS EMSASDSTSS LPVTLDSINP KVLKCEYAVR GEIVNIAQKL QEDLKTNKDA
101: YPFDEIIYCN IGNPQSLGQL PIKFFREVLA LCDHASLLDE SETHGLFSTD SIDRAWRILD HIPGRATGAY SHSQGIKGLR DVIAAGIEAR DGFPADPNDI
201: FLTDGASPAV HMMMQLLLSS EKDGILSPIP QYPLYSASIA LHGGSLVPYY LDEATGWGLE ISDLKKQLEE ARSKGISVRA LVVINPGNPT GQVLAEENQR
301: DIVNFCKQEG LVLLADEVYQ ENVYVPDKKF HSFKKVARSL GYGEKDISLV SFQSVSKGYY GECGKRGGYM EVTGFTSDVR EQIYKMASVN LCSNISGQIL
401: ASLVMSPPKP GDDSYDSYMA ERDGILSSMA KRAKTLEDAL NSLEGVTCNR AEGAMYLFPR INLPQKAIEA AEAEKTAPDA FYCKRLLNAT GVVVVPGSGF
501: GQVPGTWHFR CTILPQEDKI PAIVNRLTEF HKSFMDEFRN

Arabidopsis Description

ALAAT2alanine aminotransferase 2 [Source:TAIR;Acc:AT1G72330]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.