Subcellular Localization
min:
: max
Winner_takes_all: peroxisome
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 3
- peroxisome 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G23310.1 | CDY32970 | AT5G42980.1 | 15352244 |
| AT1G23310.1 | CDY43592 | AT5G42980.1 | 15352244 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX91708 | Canola | peroxisome | 96.77 | 96.77 |
| CDX91589 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole | 29.03 | 89.31 |
| CDX88411 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole | 29.03 | 89.31 |
| CDX86159 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole | 29.03 | 89.31 |
| Bra012371.1-P | Field mustard | cytosol | 98.51 | 87.06 |
| PGSC0003DMT400042202 | Potato | cytosol, mitochondrion, peroxisome, plastid | 17.87 | 84.71 |
| CDY41452 | Canola | peroxisome | 96.77 | 81.59 |
| CDY04729 | Canola | cytosol | 96.53 | 81.38 |
| CDY44130 | Canola | cytosol | 96.53 | 81.38 |
| AT1G23310.1 | Thale cress | cytosol | 95.78 | 80.25 |
| CDY61225 | Canola | peroxisome | 92.06 | 77.13 |
| CDY66294 | Canola | cytosol | 91.07 | 76.3 |
| VIT_00s0225g00130.t01 | Wine grape | cytosol | 85.86 | 71.93 |
| KRH69622 | Soybean | cytosol | 85.11 | 71.31 |
| KRH74536 | Soybean | cytosol | 84.62 | 70.89 |
| PGSC0003DMT400047918 | Potato | cytosol | 83.62 | 70.06 |
| GSMUA_Achr6P29540_001 | Banana | cytosol | 83.62 | 70.06 |
| Solyc01g007940.2.1 | Tomato | cytosol | 82.13 | 69.98 |
| Solyc05g013380.2.1 | Tomato | extracellular, nucleus, plastid | 83.37 | 69.85 |
| CDY12474 | Canola | peroxisome, plastid | 93.05 | 69.83 |
| GSMUA_Achr8P15810_001 | Banana | cytosol | 82.63 | 69.23 |
| Os07t0108300-01 | Rice | extracellular, nucleus, plasma membrane | 82.38 | 68.45 |
| TraesCS2B01G280600.1 | Wheat | plastid | 80.89 | 68.06 |
| TraesCS2A01G261600.1 | Wheat | peroxisome | 80.89 | 68.06 |
| HORVU2Hr1G063740.6 | Barley | peroxisome, vacuole | 81.39 | 67.49 |
| Zm00001d007937_P001 | Maize | mitochondrion | 78.66 | 66.18 |
| KXG34265 | Sorghum | cytosol | 78.41 | 66.11 |
| TraesCS2D01G262400.2 | Wheat | cytosol | 74.69 | 60.32 |
| CDX68271 | Canola | mitochondrion | 13.9 | 43.75 |
| CDY03822 | Canola | cytosol | 12.66 | 39.53 |
| CDY26256 | Canola | mitochondrion | 51.36 | 38.55 |
| CDX83914 | Canola | mitochondrion | 51.61 | 38.45 |
| CDX96776 | Canola | mitochondrion | 51.61 | 38.38 |
| CDY48485 | Canola | plastid | 51.12 | 38.15 |
| CDY21752 | Canola | mitochondrion | 51.36 | 37.84 |
| CDX81815 | Canola | mitochondrion | 51.36 | 37.7 |
| CDY50645 | Canola | cytosol | 18.61 | 34.72 |
| CDX83913 | Canola | cytosol, nucleus, peroxisome | 10.17 | 32.03 |
| CDX68272 | Canola | nucleus | 6.7 | 24.32 |
| CDX86161 | Canola | cytosol | 6.45 | 19.7 |
| CDY42751 | Canola | cytosol | 21.09 | 18.85 |
| CDY71142 | Canola | cytosol | 20.84 | 18.75 |
| CDX92755 | Canola | cytosol | 19.35 | 18.75 |
| CDX94359 | Canola | cytosol | 20.84 | 18.75 |
| CDX89355 | Canola | cytosol | 20.6 | 18.53 |
| CDY05953 | Canola | cytosol | 21.34 | 18.3 |
| CDY08163 | Canola | cytosol | 21.34 | 18.3 |
| CDY23035 | Canola | cytosol | 21.09 | 18.24 |
| CDX90035 | Canola | cytosol | 20.1 | 18.12 |
| CDY66472 | Canola | cytosol | 18.11 | 18.11 |
| CDY02111 | Canola | cytosol | 21.09 | 18.09 |
| CDX75675 | Canola | cytosol | 20.1 | 17.96 |
| CDX69326 | Canola | cytosol | 20.6 | 17.7 |
| CDX81296 | Canola | cytosol | 19.11 | 17.54 |
| CDY18674 | Canola | cytosol | 19.11 | 17.54 |
| CDX86796 | Canola | cytosol | 21.09 | 17.42 |
| CDY65356 | Canola | cytosol | 20.35 | 17.34 |
| CDY13251 | Canola | cytosol | 21.09 | 17.31 |
| CDX89520 | Canola | cytosol | 20.1 | 17.09 |
| CDY25639 | Canola | cytosol | 20.1 | 17.09 |
| CDY69462 | Canola | cytosol | 19.85 | 17.06 |
| CDY11360 | Canola | cytosol | 19.85 | 16.91 |
| CDX91604 | Canola | mitochondrion, plastid | 20.84 | 16.8 |
| CDY46931 | Canola | mitochondrion, plastid | 20.6 | 16.6 |
| CDX83146 | Canola | cytosol | 19.11 | 16.59 |
| CDY34015 | Canola | cytosol | 19.11 | 16.59 |
| CDY15174 | Canola | cytosol | 20.1 | 16.33 |
| CDY72652 | Canola | cytosol | 7.69 | 15.42 |
| CDY45965 | Canola | cytosol | 20.6 | 15.29 |
| CDY45474 | Canola | cytosol | 19.35 | 14.91 |
| CDY43579 | Canola | cytosol, mitochondrion, plastid | 5.46 | 11.46 |
| CDY25781 | Canola | cytosol | 0.0 | 0.0 |
Protein Annotations
| MapMan:1.3.3.1 | Gene3D:3.40.640.10 | Gene3D:3.90.1150.10 | GO:A0A078GH45 | UniProt:A0A078GH45 | InterPro:Aminotransferase_I/II |
| EnsemblPlants:CDY25780 | ProteinID:CDY25780 | ProteinID:CDY25780.1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0030170 | EnsemblPlantsGene:GSBRNA2T00033181001 | InterPro:IPR015421 |
| InterPro:IPR015422 | PFAM:PF00155 | PANTHER:PTHR11751 | PANTHER:PTHR11751:SF373 | InterPro:PyrdxlP-dep_Trfase | InterPro:PyrdxlP-dep_Trfase_dom1 |
| InterPro:PyrdxlP-dep_Trfase_major | SUPFAM:SSF53383 | UniParc:UPI0004EEFB7C | : | : | : |
Description
BnaA07g10020DBnaA07g10020D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GH45]
Coordinates
chrLK032180:-:288208..290395
Molecular Weight (calculated)
44669.6 Da
IEP (calculated)
5.147
GRAVY (calculated)
-0.179
Length
403 amino acids
Sequence
(BLAST)
(BLAST)
001: MLFPADAIAR ATHYLSLTSG GLGAYSDSRG LPGVRKEVAE FIERRDGYPS DPELIFLTDG ASKGVMQILN CVIRGAGDGI LVPVPQYPLY SATISLLGGS
101: LVPYYLDESE NWGLDVNNLR QSVAQARSQG ISVRAMVIIN PGNPTGQCLS EANLREILRF CYNEKLVLLG DEVYQQNIYQ DERPFISSKK VLMDMGSPFS
201: KEVQLVSFHT VSKGYWGECG QRGGYFEMTN FPPRVVEEIY KVASIALSPN VSAQIFMGLM VNPPKPGDIS YDQFTRESKG ILESLRRRAN IMTDGFNSCK
301: NVVCNFTEGA MYSFPQIRLP PGALQAAKQA GKVPDVFYCL KLLETTGIST VPGSGFGQKE GVFHLRTTIL PAEEEMPEIM DSFKKFNDEF MTQYDNNFGY
401: SRM
101: LVPYYLDESE NWGLDVNNLR QSVAQARSQG ISVRAMVIIN PGNPTGQCLS EANLREILRF CYNEKLVLLG DEVYQQNIYQ DERPFISSKK VLMDMGSPFS
201: KEVQLVSFHT VSKGYWGECG QRGGYFEMTN FPPRVVEEIY KVASIALSPN VSAQIFMGLM VNPPKPGDIS YDQFTRESKG ILESLRRRAN IMTDGFNSCK
301: NVVCNFTEGA MYSFPQIRLP PGALQAAKQA GKVPDVFYCL KLLETTGIST VPGSGFGQKE GVFHLRTTIL PAEEEMPEIM DSFKKFNDEF MTQYDNNFGY
401: SRM
001: MALKALDYDT LNENVKKCQY AVRGELYLRA SELQKEGKKI IFTNVGNPHA LGQKPLTFPR QVVALCQAPF LLDDPNVGML FPADAIARAK HYLSLTSGGL
101: GAYSDSRGLP GVRKEVAEFI QRRDGYPSDP ELIFLTDGAS KGVMQILNCV IRGNGDGILV PVPQYPLYSA TISLLGGTLV PYYLDESENW GLDVANLRQS
201: VAQARSQGIT VRAMVIINPG NPTGQCLSEA NIREILKFCY NEKLVLLGDE VYQQNIYQDE RPFISSKKVL MEMGSPFSKE VQLVSFHTVS KGYWGECGQR
301: GGYFEMTNLP PRVVEEIYKV ASIALSPNVS AQIFMGLMVN PPKPGDISYD QFARESKGIL ESLRRRARLM TDGFNSCKNV VCNFTEGAMY SFPQIRLPTG
401: ALQAAKQAGK VPDVFYCLKL LEATGISTVP GSGFGQKEGV FHLRTTILPA EDEMPEIMDS FKKFNDEFMT QYDNNFGYSK M
101: GAYSDSRGLP GVRKEVAEFI QRRDGYPSDP ELIFLTDGAS KGVMQILNCV IRGNGDGILV PVPQYPLYSA TISLLGGTLV PYYLDESENW GLDVANLRQS
201: VAQARSQGIT VRAMVIINPG NPTGQCLSEA NIREILKFCY NEKLVLLGDE VYQQNIYQDE RPFISSKKVL MEMGSPFSKE VQLVSFHTVS KGYWGECGQR
301: GGYFEMTNLP PRVVEEIYKV ASIALSPNVS AQIFMGLMVN PPKPGDISYD QFARESKGIL ESLRRRARLM TDGFNSCKNV VCNFTEGAMY SFPQIRLPTG
401: ALQAAKQAGK VPDVFYCLKL LEATGISTVP GSGFGQKEGV FHLRTTILPA EDEMPEIMDS FKKFNDEFMT QYDNNFGYSK M
Arabidopsis Description
GGAT1Glutamate--glyoxylate aminotransferase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LR30]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.