CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

cytosol 2
mitochondrion 3
peroxisome 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY32970
CDY43592

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G23310.1	CDY32970	AT5G42980.1	15352244
AT1G23310.1	CDY43592	AT5G42980.1	15352244

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY25780	Canola	peroxisome	96.77	96.77
CDX91589	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	29.53	90.84
CDX88411	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	29.53	90.84
CDX86159	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	29.53	90.84
PGSC0003DMT400042202	Potato	cytosol, mitochondrion, peroxisome, plastid	18.61	88.24
CDY41452	Canola	peroxisome	99.5	83.89
CDY04729	Canola	cytosol	97.52	82.22
CDY44130	Canola	cytosol	97.52	82.22
AT1G23310.1	Thale cress	cytosol	95.53	80.04
CDY61225	Canola	peroxisome	92.56	77.55
CDY66294	Canola	cytosol	91.56	76.72
VIT_00s0225g00130.t01	Wine grape	cytosol	86.6	72.56
KRH69622	Soybean	cytosol	85.11	71.31
KRH74536	Soybean	cytosol	84.62	70.89
GSMUA_Achr6P29540_001	Banana	cytosol	84.12	70.48
PGSC0003DMT400047918	Potato	cytosol	83.87	70.27
Solyc01g007940.2.1	Tomato	cytosol	82.38	70.19
Solyc05g013380.2.1	Tomato	extracellular, nucleus, plastid	83.62	70.06
GSMUA_Achr8P15810_001	Banana	cytosol	83.37	69.85
CDY12474	Canola	peroxisome, plastid	92.31	69.27
Os07t0108300-01	Rice	extracellular, nucleus, plasma membrane	82.63	68.66
TraesCS2A01G261600.1	Wheat	peroxisome	81.14	68.27
TraesCS2B01G280600.1	Wheat	plastid	81.14	68.27
HORVU2Hr1G063740.6	Barley	peroxisome, vacuole	81.64	67.7
KXG34265	Sorghum	cytosol	79.4	66.95
Zm00001d007937_P001	Maize	mitochondrion	78.41	65.97
TraesCS2D01G262400.2	Wheat	cytosol	74.94	60.52
CDX68271	Canola	mitochondrion	14.14	44.53
CDY26256	Canola	mitochondrion	51.86	38.92
CDX83914	Canola	mitochondrion	52.11	38.82
CDX96776	Canola	mitochondrion	52.11	38.75
CDY48485	Canola	plastid	51.61	38.52
CDY21752	Canola	mitochondrion	51.86	38.21
CDX81815	Canola	mitochondrion	51.86	38.07
CDY03822	Canola	cytosol	12.16	37.98
CDY50645	Canola	cytosol	18.61	34.72
CDX83913	Canola	cytosol, nucleus, peroxisome	10.42	32.81
CDX68272	Canola	nucleus	6.7	24.32
CDX86161	Canola	cytosol	6.45	19.7
CDX94359	Canola	cytosol	21.34	19.2
CDY71142	Canola	cytosol	21.34	19.2
CDX89355	Canola	cytosol	21.09	18.97
CDY42751	Canola	cytosol	21.09	18.85
CDX92755	Canola	cytosol	19.35	18.75
CDY05953	Canola	cytosol	21.84	18.72
CDY02111	Canola	cytosol	21.59	18.51
CDY08163	Canola	cytosol	21.59	18.51
CDY66472	Canola	cytosol	18.36	18.36
CDY23035	Canola	cytosol	21.09	18.24
CDX75675	Canola	cytosol	20.35	18.18
CDX90035	Canola	cytosol	20.1	18.12
CDX69326	Canola	cytosol	20.84	17.91
CDX86796	Canola	cytosol	21.59	17.83
CDY13251	Canola	cytosol	21.59	17.72
CDX81296	Canola	cytosol	19.11	17.54
CDY18674	Canola	cytosol	19.11	17.54
CDY65356	Canola	cytosol	20.35	17.34
CDX89520	Canola	cytosol	20.35	17.3
CDY25639	Canola	cytosol	20.35	17.3
CDY69462	Canola	cytosol	20.1	17.27
CDX91604	Canola	mitochondrion, plastid	21.09	17.0
CDY11360	Canola	cytosol	19.85	16.91
CDX83146	Canola	cytosol	19.35	16.81
CDY34015	Canola	cytosol	19.35	16.81
CDY46931	Canola	mitochondrion, plastid	20.84	16.8
CDY15174	Canola	cytosol	20.1	16.33
CDY45965	Canola	cytosol	20.84	15.47
CDY45474	Canola	cytosol	19.6	15.11
CDY72652	Canola	cytosol	7.44	14.93
CDY43579	Canola	cytosol, mitochondrion, plastid	5.46	11.46
CDY25781	Canola	cytosol	0.0	0.0

Protein Annotations

MapMan:1.3.3.1	Gene3D:3.40.640.10	Gene3D:3.90.1150.10	GO:A0A078DWV6	InterPro:Aminotransferase_I/II	EnsemblPlants:CDX91708
ProteinID:CDX91708	ProteinID:CDX91708.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0030170	EnsemblPlantsGene:GSBRNA2T00153196001	InterPro:IPR015421	InterPro:IPR015422
PFAM:PF00155	PANTHER:PTHR11751	PANTHER:PTHR11751:SF373	InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_Trfase_dom1	InterPro:PyrdxlP-dep_Trfase_major
SUPFAM:SSF53383	UniParc:UPI0004EF1313	:	:	:	:

Description

BnaC08g06270D

Coordinates

chrLK031869:-:317471..319725

Molecular Weight (calculated)

44479.6 Da

IEP (calculated)

5.882

GRAVY (calculated)

-0.158

Length

403 amino acids

Sequence
(BLAST)

001: MLFPADAIAR AKHYLSLTSG GLGAYSDSRG LPGVRKEVAE FIQRRDGYPS DPELIFLTDG ASKGVMQILN CVIRGEGDGI LVPVPQYPLY SATISLLGGS
101: LVPYYLDESE NWGLDVNNLR QSVAQARSQG ISVRAMVIIN PGNPTGQCLS EANLKEILKF CYNEKLVLLG DEVYQQNIYQ DERPFISSKK VLMDMGSPFS
201: KGVQLVSFHT VSKGYWGECG QRGGYFEMTN FPPRVVEEIY KVASIALSPN VSAQIFMGLM VSPPKPGDIS YDQFARESKG ILESLRRRAK IMTDGFNSCK
301: NVVCNFTEGA MYSFPQIRLP PGALQAAKQA GKVPDVFYCL KLLEATGIST VPGSGFGQKE GVFHLRTTIL PAEEEMPEIM DSFKKFNDEF MAQYENGFGY
401: SRM

Best Arabidopsis Sequence Match ( AT1G23310.1 )
(BLAST)

001: MALKALDYDT LNENVKKCQY AVRGELYLRA SELQKEGKKI IFTNVGNPHA LGQKPLTFPR QVVALCQAPF LLDDPNVGML FPADAIARAK HYLSLTSGGL
101: GAYSDSRGLP GVRKEVAEFI QRRDGYPSDP ELIFLTDGAS KGVMQILNCV IRGNGDGILV PVPQYPLYSA TISLLGGTLV PYYLDESENW GLDVANLRQS
201: VAQARSQGIT VRAMVIINPG NPTGQCLSEA NIREILKFCY NEKLVLLGDE VYQQNIYQDE RPFISSKKVL MEMGSPFSKE VQLVSFHTVS KGYWGECGQR
301: GGYFEMTNLP PRVVEEIYKV ASIALSPNVS AQIFMGLMVN PPKPGDISYD QFARESKGIL ESLRRRARLM TDGFNSCKNV VCNFTEGAMY SFPQIRLPTG
401: ALQAAKQAGK VPDVFYCLKL LEATGISTVP GSGFGQKEGV FHLRTTILPA EDEMPEIMDS FKKFNDEFMT QYDNNFGYSK M

Arabidopsis Description

GGAT1Glutamate--glyoxylate aminotransferase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LR30]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.