Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- cytosol 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G23310.1 | CDY32970 | AT5G42980.1 | 15352244 |
| AT1G23310.1 | CDY43592 | AT5G42980.1 | 15352244 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY04729 | Canola | cytosol | 93.1 | 11.3 |
| CDY41452 | Canola | peroxisome | 93.1 | 11.3 |
| CDY44130 | Canola | cytosol | 93.1 | 11.3 |
| AT1G23310.1 | Thale cress | cytosol | 93.1 | 11.23 |
| Solyc05g013380.2.1 | Tomato | extracellular, nucleus, plastid | 91.38 | 11.02 |
| PGSC0003DMT400047918 | Potato | cytosol | 91.38 | 11.02 |
| CDY61225 | Canola | peroxisome | 91.38 | 11.02 |
| CDY66294 | Canola | cytosol | 89.66 | 10.81 |
| Solyc01g007940.2.1 | Tomato | cytosol | 87.93 | 10.78 |
| TraesCS2B01G280600.1 | Wheat | plastid | 87.93 | 10.65 |
| TraesCS2A01G261600.1 | Wheat | peroxisome | 87.93 | 10.65 |
| VIT_00s0225g00130.t01 | Wine grape | cytosol | 87.93 | 10.6 |
| GSMUA_Achr6P29540_001 | Banana | cytosol | 87.93 | 10.6 |
| GSMUA_Achr8P15810_001 | Banana | cytosol | 87.93 | 10.6 |
| KXG34265 | Sorghum | cytosol | 86.21 | 10.46 |
| KRH69622 | Soybean | cytosol | 86.21 | 10.39 |
| KRH74536 | Soybean | cytosol | 86.21 | 10.39 |
| Os07t0108300-01 | Rice | extracellular, nucleus, plasma membrane | 86.21 | 10.31 |
| CDY12474 | Canola | peroxisome, plastid | 94.83 | 10.24 |
| TraesCS2D01G262400.2 | Wheat | cytosol | 87.93 | 10.22 |
| Zm00001d007937_P001 | Maize | mitochondrion | 82.76 | 10.02 |
| CDY03822 | Canola | cytosol | 20.69 | 9.3 |
| Bra012371.1-P | Field mustard | cytosol | 60.34 | 7.68 |
| HORVU2Hr1G063740.6 | Barley | peroxisome, vacuole | 63.79 | 7.61 |
| CDX68272 | Canola | nucleus | 12.07 | 6.31 |
| CDX83914 | Canola | mitochondrion | 51.72 | 5.55 |
| CDX96776 | Canola | mitochondrion | 51.72 | 5.54 |
| CDY26256 | Canola | mitochondrion | 50.0 | 5.4 |
| CDY48485 | Canola | plastid | 50.0 | 5.37 |
| CDY21752 | Canola | mitochondrion | 50.0 | 5.3 |
| CDX81815 | Canola | mitochondrion | 50.0 | 5.28 |
| CDY72652 | Canola | cytosol | 17.24 | 4.98 |
| CDY50645 | Canola | cytosol | 10.34 | 2.78 |
| CDY43579 | Canola | cytosol, mitochondrion, plastid | 8.62 | 2.6 |
| CDX92755 | Canola | cytosol | 17.24 | 2.4 |
| CDY42751 | Canola | cytosol | 17.24 | 2.22 |
| CDY71142 | Canola | cytosol | 15.52 | 2.01 |
| CDX94359 | Canola | cytosol | 15.52 | 2.01 |
| CDX89355 | Canola | cytosol | 15.52 | 2.01 |
| CDY46931 | Canola | mitochondrion, plastid | 17.24 | 2.0 |
| CDY66472 | Canola | cytosol | 13.79 | 1.99 |
| CDY45474 | Canola | cytosol | 17.24 | 1.91 |
| CDY11360 | Canola | cytosol | 15.52 | 1.9 |
| CDY65356 | Canola | cytosol | 15.52 | 1.9 |
| CDY25639 | Canola | cytosol | 15.52 | 1.9 |
| CDX89520 | Canola | cytosol | 15.52 | 1.9 |
| CDY45965 | Canola | cytosol | 17.24 | 1.84 |
| CDY15174 | Canola | cytosol | 15.52 | 1.81 |
| CDX91604 | Canola | mitochondrion, plastid | 15.52 | 1.8 |
| CDX75675 | Canola | cytosol | 13.79 | 1.77 |
| CDY23035 | Canola | cytosol | 13.79 | 1.72 |
| CDX69326 | Canola | cytosol | 13.79 | 1.71 |
| CDY69462 | Canola | cytosol | 13.79 | 1.71 |
| CDY02111 | Canola | cytosol | 13.79 | 1.7 |
| CDY05953 | Canola | cytosol | 13.79 | 1.7 |
| CDY08163 | Canola | cytosol | 13.79 | 1.7 |
| CDY13251 | Canola | cytosol | 13.79 | 1.63 |
| CDY18674 | Canola | cytosol | 12.07 | 1.59 |
| CDX81296 | Canola | cytosol | 12.07 | 1.59 |
| CDX83913 | Canola | cytosol, nucleus, peroxisome | 3.45 | 1.56 |
| CDX86796 | Canola | cytosol | 12.07 | 1.43 |
| CDY34015 | Canola | cytosol | 10.34 | 1.29 |
| CDX83146 | Canola | cytosol | 10.34 | 1.29 |
| CDX86161 | Canola | cytosol | 1.72 | 0.76 |
| PGSC0003DMT400042202 | Potato | cytosol, mitochondrion, peroxisome, plastid | 0.0 | 0.0 |
| CDX68271 | Canola | mitochondrion | 0.0 | 0.0 |
| CDX91708 | Canola | peroxisome | 0.0 | 0.0 |
| CDX90035 | Canola | cytosol | 0.0 | 0.0 |
| CDX86159 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole | 0.0 | 0.0 |
| CDY25780 | Canola | peroxisome | 0.0 | 0.0 |
| CDX88411 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole | 0.0 | 0.0 |
| CDX91589 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:CDY25781 | EnsemblPlantsGene:GSBRNA2T00033182001 | Gene3D:3.90.1150.10 | GO:GO:0003674 | GO:GO:0003824 | InterPro:IPR015422 |
| InterPro:PyrdxlP-dep_Trfase_dom1 | PANTHER:PTHR11751 | PANTHER:PTHR11751:SF373 | ProteinID:CDY25781 | ProteinID:CDY25781.1 | UniParc:UPI0004EE6607 |
| UniProt:A0A078GK63 | MapMan:35.1 | : | : | : | : |
Description
BnaA07g10010DBnaA07g10010D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GK63]
Coordinates
chrLK032180:-:290469..291009
Molecular Weight (calculated)
6604.0 Da
IEP (calculated)
9.133
GRAVY (calculated)
-0.616
Length
58 amino acids
Sequence
(BLAST)
(BLAST)
1: MALEYDSLNE NVKKCQYAVR GELYLRASEL QKEGKKIIFT NVGNPHALGQ KPLTFPHN
001: MALKALDYDT LNENVKKCQY AVRGELYLRA SELQKEGKKI IFTNVGNPHA LGQKPLTFPR QVVALCQAPF LLDDPNVGML FPADAIARAK HYLSLTSGGL
101: GAYSDSRGLP GVRKEVAEFI QRRDGYPSDP ELIFLTDGAS KGVMQILNCV IRGNGDGILV PVPQYPLYSA TISLLGGTLV PYYLDESENW GLDVANLRQS
201: VAQARSQGIT VRAMVIINPG NPTGQCLSEA NIREILKFCY NEKLVLLGDE VYQQNIYQDE RPFISSKKVL MEMGSPFSKE VQLVSFHTVS KGYWGECGQR
301: GGYFEMTNLP PRVVEEIYKV ASIALSPNVS AQIFMGLMVN PPKPGDISYD QFARESKGIL ESLRRRARLM TDGFNSCKNV VCNFTEGAMY SFPQIRLPTG
401: ALQAAKQAGK VPDVFYCLKL LEATGISTVP GSGFGQKEGR R
101: GAYSDSRGLP GVRKEVAEFI QRRDGYPSDP ELIFLTDGAS KGVMQILNCV IRGNGDGILV PVPQYPLYSA TISLLGGTLV PYYLDESENW GLDVANLRQS
201: VAQARSQGIT VRAMVIINPG NPTGQCLSEA NIREILKFCY NEKLVLLGDE VYQQNIYQDE RPFISSKKVL MEMGSPFSKE VQLVSFHTVS KGYWGECGQR
301: GGYFEMTNLP PRVVEEIYKV ASIALSPNVS AQIFMGLMVN PPKPGDISYD QFARESKGIL ESLRRRARLM TDGFNSCKNV VCNFTEGAMY SFPQIRLPTG
401: ALQAAKQAGK VPDVFYCLKL LEATGISTVP GSGFGQKEGR R
Arabidopsis Description
GGAT1Glutamate--glyoxylate aminotransferase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LR30]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.