Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, extracellular, endoplasmic reticulum, vacuole, plastid, cytosol, plasma membrane, golgi
Predictor Summary:
Predictor Summary:
- cytosol 2
- plastid 2
- peroxisome 1
- mitochondrion 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX91589 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole | 100.0 | 100.0 |
| CDX86159 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole | 100.0 | 100.0 |
| PGSC0003DMT400042202 | Potato | cytosol, mitochondrion, peroxisome, plastid | 36.64 | 56.47 |
| Bra009959.1-P | Field mustard | cytosol, peroxisome, plasma membrane | 93.89 | 35.76 |
| CDX91708 | Canola | peroxisome | 90.84 | 29.53 |
| CDY25780 | Canola | peroxisome | 89.31 | 29.03 |
| CDY61225 | Canola | peroxisome | 95.42 | 25.99 |
| CDY66294 | Canola | cytosol | 94.66 | 25.78 |
| AT1G70580.1 | Thale cress | cytosol, nucleus, peroxisome | 93.89 | 25.57 |
| CDY44130 | Canola | cytosol | 91.6 | 25.1 |
| CDY04729 | Canola | cytosol | 91.6 | 25.1 |
| CDY41452 | Canola | peroxisome | 90.84 | 24.9 |
| CDX68271 | Canola | mitochondrion | 23.66 | 24.22 |
| KRH69622 | Soybean | cytosol | 84.73 | 23.08 |
| Os07t0108300-01 | Rice | extracellular, nucleus, plasma membrane | 83.97 | 22.68 |
| VIT_00s0225g00130.t01 | Wine grape | cytosol | 83.21 | 22.66 |
| KRH74536 | Soybean | cytosol | 83.21 | 22.66 |
| Solyc01g007940.2.1 | Tomato | cytosol | 81.68 | 22.62 |
| KXG34265 | Sorghum | cytosol | 82.44 | 22.59 |
| GSMUA_Achr6P29540_001 | Banana | cytosol | 81.68 | 22.25 |
| GSMUA_Achr8P15810_001 | Banana | cytosol | 81.68 | 22.25 |
| Zm00001d007937_P001 | Maize | mitochondrion | 80.92 | 22.13 |
| PGSC0003DMT400047918 | Potato | cytosol | 80.92 | 22.04 |
| Solyc05g013380.2.1 | Tomato | extracellular, nucleus, plastid | 80.92 | 22.04 |
| TraesCS2A01G261600.1 | Wheat | peroxisome | 80.15 | 21.92 |
| TraesCS2B01G280600.1 | Wheat | plastid | 80.15 | 21.92 |
| CDY12474 | Canola | peroxisome, plastid | 89.31 | 21.79 |
| HORVU2Hr1G063740.6 | Barley | peroxisome, vacuole | 80.15 | 21.6 |
| TraesCS2D01G262400.2 | Wheat | cytosol | 76.34 | 20.04 |
| CDX83913 | Canola | cytosol, nucleus, peroxisome | 17.56 | 17.97 |
| CDY26256 | Canola | mitochondrion | 49.62 | 12.1 |
| CDY21752 | Canola | mitochondrion | 50.38 | 12.07 |
| CDY48485 | Canola | plastid | 49.62 | 12.04 |
| CDX81815 | Canola | mitochondrion | 50.38 | 12.02 |
| CDX83914 | Canola | mitochondrion | 48.85 | 11.83 |
| CDX96776 | Canola | mitochondrion | 48.85 | 11.81 |
| CDY65356 | Canola | cytosol | 19.08 | 5.29 |
| CDX90035 | Canola | cytosol | 17.56 | 5.15 |
| CDY11360 | Canola | cytosol | 18.32 | 5.07 |
| CDX92755 | Canola | cytosol | 15.27 | 4.81 |
| CDX94359 | Canola | cytosol | 16.03 | 4.69 |
| CDY71142 | Canola | cytosol | 16.03 | 4.69 |
| CDY43579 | Canola | cytosol, mitochondrion, plastid | 6.87 | 4.69 |
| CDY08163 | Canola | cytosol | 16.79 | 4.68 |
| CDY42751 | Canola | cytosol | 16.03 | 4.66 |
| CDY25639 | Canola | cytosol | 16.79 | 4.64 |
| CDX89520 | Canola | cytosol | 16.79 | 4.64 |
| CDY15174 | Canola | cytosol | 17.56 | 4.64 |
| CDY34015 | Canola | cytosol | 16.03 | 4.53 |
| CDX83146 | Canola | cytosol | 16.03 | 4.53 |
| CDY23035 | Canola | cytosol | 16.03 | 4.51 |
| CDY05953 | Canola | cytosol | 16.03 | 4.47 |
| CDY02111 | Canola | cytosol | 16.03 | 4.47 |
| CDY66472 | Canola | cytosol | 13.74 | 4.47 |
| CDX89355 | Canola | cytosol | 15.27 | 4.46 |
| CDX69326 | Canola | cytosol | 15.27 | 4.26 |
| CDX75675 | Canola | cytosol | 14.5 | 4.21 |
| CDY50645 | Canola | cytosol | 6.87 | 4.17 |
| CDY69462 | Canola | cytosol | 14.5 | 4.05 |
| CDX86796 | Canola | cytosol | 14.5 | 3.89 |
| CDY13251 | Canola | cytosol | 14.5 | 3.87 |
| CDY45474 | Canola | cytosol | 15.27 | 3.82 |
| CDY45965 | Canola | cytosol | 15.27 | 3.68 |
| CDY18674 | Canola | cytosol | 12.21 | 3.64 |
| CDX81296 | Canola | cytosol | 12.21 | 3.64 |
| CDX91604 | Canola | mitochondrion, plastid | 12.21 | 3.2 |
| CDY46931 | Canola | mitochondrion, plastid | 12.21 | 3.2 |
| CDY72652 | Canola | cytosol | 0.0 | 0.0 |
| CDX68272 | Canola | nucleus | 0.0 | 0.0 |
| CDY03822 | Canola | cytosol | 0.0 | 0.0 |
| CDX86161 | Canola | cytosol | 0.0 | 0.0 |
| CDY25781 | Canola | cytosol | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:CDX88411 | EnsemblPlantsGene:GSBRNA2T00147949001 | Gene3D:3.90.1150.10 | GO:A0A078DCU2 | GO:GO:0003674 | GO:GO:0003824 |
| InterPro:IPR015422 | InterPro:PyrdxlP-dep_Trfase | InterPro:PyrdxlP-dep_Trfase_dom1 | PANTHER:PTHR11751 | PANTHER:PTHR11751:SF373 | ProteinID:CDX88411 |
| ProteinID:CDX88411.1 | SUPFAM:SSF53383 | UniParc:UPI0004EE9718 | MapMan:35.1 | : | : |
Description
BnaC06g38550D
Coordinates
chrLK031855:-:848241..849270
Molecular Weight (calculated)
14510.7 Da
IEP (calculated)
9.788
GRAVY (calculated)
-0.042
Length
131 amino acids
Sequence
(BLAST)
(BLAST)
001: MQTVEEIYKV ASIALSPNVS AQIFMGLMVS PPKPGDISYD QFVRERRRAR IMTDGFNSCK NVVCNFTEGA MYSFPQIKLP PKAIQAAKQA GKVPDVFYCL
101: KLFEATGIST VPGSGFGQKE GVFHLRLWKV S
101: KLFEATGIST VPGSGFGQKE GVFHLRLWKV S
001: MALKALDYDT LNENVKKCQY AVRGELYLRA SELQKEGKKI IFTNVGNPHA LGQKPLTFPR QVVALCQAPF LLDDPNVGML FPADAIARAK HYLSLTSGGL
101: GAYSDSRGLP GVRKEVAEFI QRRDGYPSDP ELIFLTDGAS KGVMQILNCV IRGNGDGILV PVPQYPLYSA TISLLGGTLV PYYLDESENW GLDVANLRQS
201: VAQARSQGIT VRAMVIINPG NPTGQCLSEA NIREILKFCY NEKLVLLGDE VYQQNIYQDE RPFISSKKVL MEMGSPFSKE VQLVSFHTVS KGYWGECGQR
301: GGYFEMTNLP PRVVEEIYKV ASIALSPNVS AQIFMGLMVN PPKPGDISYD QFARESKGIL ESLRRRARLM TDGFNSCKNV VCNFTEGAMY SFPQIRLPTG
401: ALQAAKQAGK VPDVFYCLKL LEATGISTVP GSGFGQKEGV FHLRTTILPA EDEMPEIMDS FKKFNDEFMT QYDNNFGYSK M
101: GAYSDSRGLP GVRKEVAEFI QRRDGYPSDP ELIFLTDGAS KGVMQILNCV IRGNGDGILV PVPQYPLYSA TISLLGGTLV PYYLDESENW GLDVANLRQS
201: VAQARSQGIT VRAMVIINPG NPTGQCLSEA NIREILKFCY NEKLVLLGDE VYQQNIYQDE RPFISSKKVL MEMGSPFSKE VQLVSFHTVS KGYWGECGQR
301: GGYFEMTNLP PRVVEEIYKV ASIALSPNVS AQIFMGLMVN PPKPGDISYD QFARESKGIL ESLRRRARLM TDGFNSCKNV VCNFTEGAMY SFPQIRLPTG
401: ALQAAKQAGK VPDVFYCLKL LEATGISTVP GSGFGQKEGV FHLRTTILPA EDEMPEIMDS FKKFNDEFMT QYDNNFGYSK M
Arabidopsis Description
GGAT1Glutamate--glyoxylate aminotransferase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LR30]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.