Factsheet for TraesCS2B01G280600.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

peroxisome 3
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, peroxisome
MultiLoc:	peroxisome
PProwler:	peroxisome
WoLF PSORT:	peroxisome
YLoc:	cytosol

plastid: 28542341

msms PMID: 28542341 doi

K Shi, J Gu, H Guo, L Zhao, Y Xie, H Xiong, J Li, S Zhao, X Song, L Liu

National Key Facility for Crop Gene Resources and Genetic Improvement, Institute of Crop Sciences, Chinese Academy of Agricultural Sciences, Beijing, China., School of Life Sciences, Qingdao Agricultural University, Qingdao, Shandong, China.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G325600.1
TraesCS1B01G338800.1
TraesCS1B01G339000.1
TraesCS1D01G327500.1
TraesCS7A01G562100.1
TraesCS7D01G001000.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G23310.1	TraesCS1A01G325600.1	AT5G42980.1	15352244
AT1G23310.1	TraesCS1B01G338800.1	AT5G42980.1	15352244
AT1G23310.1	TraesCS1B01G339000.1	AT5G42980.1	15352244
AT1G23310.1	TraesCS1D01G327500.1	AT5G42980.1	15352244
AT1G23310.1	TraesCS7A01G562100.1	AT5G42980.1	15352244
AT1G23310.1	TraesCS7D01G001000.1	AT5G42980.1	15352244

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G261600.1	Wheat	peroxisome	99.79	99.79
HORVU2Hr1G063740.6	Barley	peroxisome, vacuole	95.2	93.83
Os07t0108300-01	Rice	extracellular, nucleus, plasma membrane	91.23	90.1
TraesCS2D01G262400.2	Wheat	cytosol	92.9	89.18
Zm00001d007937_P001	Maize	mitochondrion	88.1	88.1
CDY25781	Canola	cytosol	10.65	87.93
KXG34265	Sorghum	cytosol	87.47	87.66
GSMUA_Achr6P29540_001	Banana	cytosol	87.47	87.11
VIT_00s0225g00130.t01	Wine grape	cytosol	86.85	86.49
GSMUA_Achr8P15810_001	Banana	cytosol	85.59	85.24
PGSC0003DMT400047918	Potato	cytosol	84.55	84.2
Solyc05g013380.2.1	Tomato	extracellular, nucleus, plastid	84.34	83.99
CDY61225	Canola	peroxisome	84.34	83.99
Bra016202.1-P	Field mustard	cytosol	84.34	83.82
KRH69622	Soybean	cytosol	84.13	83.78
CDY04729	Canola	cytosol	83.3	83.47
Bra024580.1-P	Field mustard	cytosol	83.3	83.47
CDY44130	Canola	cytosol	83.3	83.47
AT1G70580.1	Thale cress	cytosol, nucleus, peroxisome	83.72	83.37
Bra016353.1-P	Field mustard	cytosol	83.09	83.26
CDY41452	Canola	peroxisome	82.88	83.05
CDY66294	Canola	cytosol	83.3	82.95
KRH74536	Soybean	cytosol	83.3	82.95
AT1G23310.1	Thale cress	cytosol	83.09	82.74
Solyc01g007940.2.1	Tomato	cytosol	81.42	82.45
Bra012371.1-P	Field mustard	cytosol	77.66	81.58
PGSC0003DMT400042202	Potato	cytosol, mitochondrion, peroxisome, plastid	14.4	81.18
CDX91708	Canola	peroxisome	68.27	81.14
CDY25780	Canola	peroxisome	68.06	80.89
CDX88411	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	21.92	80.15
CDX91589	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	21.92	80.15
CDX86159	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	21.92	80.15
CDY12474	Canola	peroxisome, plastid	78.91	70.39
TraesCS1B01G102700.1	Wheat	golgi, plastid	51.15	50.83
Bra009959.1-P	Field mustard	cytosol, peroxisome, plasma membrane	36.33	50.58
TraesCS5B01G214700.1	Wheat	cytosol	45.72	44.33
TraesCS2B01G193600.1	Wheat	mitochondrion	49.9	42.6
TraesCS5B01G066600.1	Wheat	cytosol	45.51	36.27
CDX86161	Canola	cytosol	6.26	22.73
TraesCS3B01G125200.1	Wheat	plastid	17.95	18.9
TraesCS2B01G414800.1	Wheat	cytosol	18.37	18.11
TraesCS4B01G058200.1	Wheat	cytosol	18.16	17.94

Protein Annotations

EnsemblPlants:TraesCS2B01G280600.1	EnsemblPlantsGene:TraesCS2B01G280600	Gene3D:3.40.640.10	Gene3D:3.90.1150.10	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0030170	InterPro:Aminotransferase_I/II
InterPro:IPR015421	InterPro:IPR015422	InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_Trfase_dom1	InterPro:PyrdxlP-dep_Trfase_major	PANTHER:PTHR11751
PANTHER:PTHR11751:SF373	PFAM:PF00155	SUPFAM:SSF53383	TIGR:cd00609	MapMan:1.3.3.1	:

Description

No Description!

Coordinates

chr2B:-:387103597..387108560

Molecular Weight (calculated)

53309.2 Da

IEP (calculated)

6.998

GRAVY (calculated)

-0.212

Length

479 amino acids

Sequence
(BLAST)

001: MMGRKALDYE ELNENVKKVQ YAVRGELYLR ASELQKEGKR IIFTNVGNPH ALGQKPLTFP RQVVALCQAP FLLDDPNVGL IFPADAIARA KHYLSLAPGG
101: LGAYSDSRGI PGVRQEVAEF IQRRDGYPSD PELIYLTDGA SKGVMQMLNA IIRNERDGIL VPVPQYPLYS AAISLFGGSL VPYYLEEEAN WGLDLVSTRQ
201: SVAEARSKGI TVRAMVIINP GNPTGQCLSE ANIRELLNFC YQENLVLLAD EVYQQNVYQD ERPFISARKV MFDMGPPVSR EVQLISFHTV SKGYWGECGQ
301: RGGYFEMTNI PPKTVDEIYK VASIALSPNV PGQIFMGLMV NPPKPGDISY LKYSAESKSI LESLRRRAQI MTDGFNSCRN VVCNFTEGAM YSFPQIRLPQ
401: RAMDVAKSAG KAPDVYYCLK LLEATGISTV PGSGFGQKEG VFHLRTTILP AEEDMPAIMS SFKKFNDSFM EQYQNHSRL

Best Arabidopsis Sequence Match ( AT1G70580.4 )
(BLAST)

001: MSLKALDYES LNENVKNCQY AVRGELYLRA SELQKEGKKI IFTNVGNPHA LGQKPLTFPR QVVSLCQAPF LLDDPNVGMI FPADAIARAK HYLSLTSGGL
101: GAYSDSRGLP GVRKEVAEFI ERRDGYPSDP ELIFLTDGAS KGVMQILNCV IRGQKDGILV PVPQYPLYSA TISLLGGTLV PYYLEESENW GLDVNNLRQS
201: VAQARSQGIT VRAMVIINPG NPTGQCLSEA NIREILRFCC DERLVLLGDE VYQQNIYQDE RPFISSKKVL MDMGAPISKE VQLISFHTVS KGYWGECGQR
301: GGYFEMTNIP PRTVEEIYKV ASIALSPNVS AQIFMGLMVS PPKPGDISYD QFVRESKGIL ESLRRRARMM TDGFNSCKNV VCNFTEGAMY SFPQIKLPSK
401: AIQAAKQAGK VPDVFYCLKL LEATGISTVP GSGFGQKEGV FHLRTTILPA EEEMPEIMDS FKKFNDEFMS QYADNFGYSR M

Arabidopsis Description

GGAT2Glutamate--glyoxylate aminotransferase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9S7E9]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.