CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX86796
CDX89368
CDX89520
CDX92752
CDX94382
CDY11360
CDY13251
CDY14318
CDY25639
CDY42756
CDY50002
CDY50003
CDY65356

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G11280.1	CDX89520	AT2G22810.1	14983000
AT4G11280.1	CDY25639	AT2G22810.1	14983000
AT4G11280.1	CDY11360	AT3G61510.1	14983000
AT4G11280.1	CDY65356	AT3G61510.1	14983000
AT4G11280.1	CDX86796	AT4G11280.1	14983000
AT4G11280.1	CDY13251	AT4G11280.1	14983000
AT4G11280.1	CDX89368	AT4G26080.1	19705149
AT4G11280.1	CDX92752	AT4G26080.1	19705149
AT4G11280.1	CDX94382	AT4G26080.1	19705149
AT4G11280.1	CDY14318	AT4G26080.1	19705149
AT4G11280.1	CDY42756	AT4G26080.1	19705149
AT4G11280.1	CDY50002	AT4G26080.1	19705149
AT4G11280.1	CDY50003	AT4G26080.1	19705149

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra035236.1-P	Field mustard	cytosol	100.0	100.0
CDY13251	Canola	cytosol	97.34	96.74
AT4G11280.1	Thale cress	cytosol	91.39	90.1
KRH41241	Soybean	cytosol	65.16	65.7
VIT_02s0025g00360.t01	Wine grape	cytosol	64.55	65.49
KRH59970	Soybean	cytosol	64.34	64.88
PGSC0003DMT400032096	Potato	cytosol	63.93	64.46
KRH27892	Soybean	cytosol	62.91	63.96
Solyc08g081540.2.1	Tomato	cytosol	63.11	63.77
PGSC0003DMT400031769	Potato	cytosol	63.32	63.71
PGSC0003DMT400014932	Potato	cytosol	63.32	63.58
Solyc08g081550.2.1	Tomato	cytosol	61.07	63.14
TraesCS2A01G396400.1	Wheat	cytosol	61.68	61.93
TraesCS2B01G414800.1	Wheat	cytosol	61.48	61.73
TraesCS2D01G394200.1	Wheat	cytosol	61.48	61.73
GSMUA_Achr4P24930_001	Banana	cytosol	60.66	61.54
CDY11360	Canola	cytosol	58.81	60.68
Zm00001d002592_P002	Maize	cytosol	60.25	60.62
EES12700	Sorghum	cytosol	60.45	60.08
GSMUA_Achr4P29150_001	Banana	cytosol	59.43	59.67
CDY65356	Canola	cytosol	57.58	59.41
GSMUA_AchrUn_...	Banana	cytosol	53.89	59.37
CDY15174	Canola	cytosol	60.25	59.27
CDX90035	Canola	cytosol	54.1	59.06
Os04t0578000-01	Rice	cytosol	58.4	59.01
Solyc12g056180.1.1	Tomato	cytosol	56.56	58.35
PGSC0003DMT400012864	Potato	cytosol	57.79	58.14
Zm00001d026060_P003	Maize	cytosol	59.63	57.06
Solyc08g008100.2.1	Tomato	nucleus	42.21	56.44
CDY72652	Canola	cytosol	22.95	55.72
CDY66472	Canola	cytosol	45.29	54.84
CDY42751	Canola	cytosol	50.0	54.1
CDX75675	Canola	cytosol	50.0	54.1
CDX94359	Canola	cytosol	49.59	54.02
CDX89355	Canola	cytosol	49.18	53.57
CDY71142	Canola	cytosol	49.18	53.57
CDX69326	Canola	cytosol	50.61	52.67
CDX92755	Canola	cytosol	44.67	52.4
CDY69462	Canola	cytosol	50.2	52.24
CDY34015	Canola	cytosol	49.39	51.94
CDX83146	Canola	cytosol	49.18	51.72
CDY25639	Canola	cytosol	50.2	51.69
CDX81296	Canola	cytosol	45.9	51.03
CDX89520	Canola	cytosol	49.39	50.84
CDY18674	Canola	cytosol	45.7	50.8
CDY08163	Canola	cytosol	48.77	50.64
CDY23035	Canola	cytosol	48.16	50.43
CDY05953	Canola	cytosol	48.57	50.43
CDY02111	Canola	cytosol	48.57	50.43
HORVU2Hr1G094230.2	Barley	cytosol	49.59	50.0
CDY46931	Canola	mitochondrion, plastid	35.04	34.2
CDX91604	Canola	mitochondrion, plastid	34.63	33.8
CDY45474	Canola	cytosol	34.02	31.74
CDY45965	Canola	cytosol	35.25	31.68
CDY43579	Canola	cytosol, mitochondrion, plastid	11.89	30.21
CDX91708	Canola	peroxisome	17.83	21.59
CDY25780	Canola	peroxisome	17.42	21.09
CDY61225	Canola	peroxisome	19.67	19.96
CDY41452	Canola	peroxisome	19.47	19.87
CDY66294	Canola	cytosol	19.47	19.75
CDY44130	Canola	cytosol	19.26	19.67
CDY04729	Canola	cytosol	19.26	19.67
CDX68271	Canola	mitochondrion	5.12	19.53
CDY50645	Canola	cytosol	8.4	18.98
CDY26256	Canola	mitochondrion	19.67	17.88
CDX83914	Canola	mitochondrion	19.47	17.56
CDY48485	Canola	plastid	19.26	17.41
CDY21752	Canola	mitochondrion	19.26	17.18
CDX96776	Canola	mitochondrion	19.06	17.16
CDX81815	Canola	mitochondrion	19.26	17.12
CDY12474	Canola	peroxisome, plastid	18.03	16.39
CDY03822	Canola	cytosol	4.3	16.28
CDX91589	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	3.89	14.5
CDX88411	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	3.89	14.5
CDX86159	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	3.89	14.5
CDX68272	Canola	nucleus	3.07	13.51
CDY25781	Canola	cytosol	1.43	12.07
CDX83913	Canola	cytosol, nucleus, peroxisome	2.87	10.94
CDX86161	Canola	cytosol	2.87	10.61

Protein Annotations

MapMan:11.5.1.1	Gene3D:3.40.640.10	Gene3D:3.90.1150.10	GO:A0A078DC04	InterPro:Aminotransferase_I/II	EnsemblPlants:CDX86796
ProteinID:CDX86796	ProteinID:CDX86796.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0030170	EnsemblPlantsGene:GSBRNA2T00145532001	InterPro:IPR015421	InterPro:IPR015422
InterPro:NHTrfase_class1_PyrdxlP-BS	PFAM:PF00155	PRINTS:PR00753	ScanProsite:PS00105	PANTHER:PTHR43795	PANTHER:PTHR43795:SF6
InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_Trfase_dom1	InterPro:PyrdxlP-dep_Trfase_major	SUPFAM:SSF53383	UniParc:UPI0002546B13	SEG:seg

Description

BnaA09g21860D

Coordinates

chrLK031847:-:789008..791096

Molecular Weight (calculated)

54789.8 Da

IEP (calculated)

6.825

GRAVY (calculated)

-0.240

Length

488 amino acids

Sequence
(BLAST)

001: MVALTAEKQD HNLLSRMAAG DGHGENSAYF DGWKAYEENP FHPIDRPDGV IQMGLAENQL CGDLMRKWVL EHPEASICTA EGVNQFSDIA IFQDYHGLPE
101: FRQAVAKFME KTRNNKVKFD PDRIVMSGGA TGAHETVAFC LANPGDGFLV PTPYYPGFDR DLRWRTGVNL VPVTCHSSNG FKITVEALDA AYENARVPVK
201: GLLITNPSNP LGTTLDRDCL KSLVKFTNDK GIHLIADEIY AATTFGESEF ISVAEVIEEI PDCNRDLIHI VYSLSKDMGL PGLRIGIIYS YNNRVVQIAR
301: KMSSFGLVSS QTQHLIAKML SDKDFVDEFI RKSKLRLAER HAELTTGLDG LGIGWLKAGA GLFIWMDLRN LLKTATFDSE MELWRVIVHK VKLNVSPGGS
401: CHCHEPGWFR VCFANMDHQT METALERIRV FTSQIEEESL KLTKQMAKKK KCWQSSLRLS FKDTRRFEEG FFSPHSPVPP SPLVRAQI

Best Arabidopsis Sequence Match ( AT4G11280.1 )
(BLAST)

001: MVAFATEKKQ DLNLLSKIAS GDGHGENSSY FDGWKAYEEN PFHPIDRPDG VIQMGLAENQ LCGDLMRKWV LKHPEASICT SEGVNQFSDI AIFQDYHGLP
101: EFRQAVAKFM EKTRNNKVKF DPDRIVMSGG ATGAHETVAF CLANPGDGFL VPTPYYPGFD RDLRWRTGVN LVPVTCHSSN GFKITVEALE AAYENARKSN
201: IPVKGLLVTN PSNPLGTTLD RECLKSLVNF TNDKGIHLIA DEIYAATTFG QSEFISVAEV IEEIEDCNRD LIHIVYSLSK DMGLPGLRVG IVYSYNDRVV
301: QIARKMSSFG LVSSQTQHLI AKMLSDEEFV DEFIRESKLR LAARHAEITT GLDGLGIGWL KAKAGLFLWM DLRNLLKTAT FDSETELWRV IVHQVKLNVS
401: PGGSFHCHEP GWFRVCFANM DHKTMETALE RIRVFTSQLE EETKPMAATT MMAKKKKKCW QSNLRLSFSD TRRFDDGFFS PHSPVPPSPL VRAQT

Arabidopsis Description

ACS61-aminocyclopropane-1-carboxylate synthase 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9SAR0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.