Factsheet for Solyc02g072390.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 1
extracellular 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g109660.2.1
Solyc10g051380.1.1
Solyc10g051390.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G46330.1	Solyc01g109660.2.1	AT2G21660.1	23395902
AT5G46330.1	Solyc10g051380.1.1	AT2G21660.1	23395902
AT5G46330.1	Solyc10g051390.1.1	AT2G21660.1	23395902

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G461900.1	Wheat	extracellular, plasma membrane, vacuole	26.69	16.42
TraesCS2D01G462100.1	Wheat	extracellular, plasma membrane	26.35	16.22
TraesCS2B01G483500.1	Wheat	extracellular, plasma membrane	26.35	16.22
Solyc03g112680.1.1	Tomato	plasma membrane	33.11	10.06
Solyc02g070910.1.1	Tomato	nucleus, plasma membrane	32.43	10.02
Solyc02g084370.1.1	Tomato	plasma membrane	33.45	8.78
Solyc04g081080.1.1	Tomato	plasma membrane	32.43	8.45
Bra022032.1-P	Field mustard	plasma membrane	31.08	8.31
Solyc02g070890.2.1	Tomato	plasma membrane	32.77	8.3
Solyc03g033610.1.1	Tomato	plasma membrane, plastid	31.42	8.24
AT5G46330.1	Thale cress	plasma membrane	32.09	8.1
HORVU2Hr1G104030.4	Barley	mitochondrion, plasma membrane	29.73	7.91
Zm00001d002287_P001	Maize	plasma membrane	31.76	7.9
EES12871	Sorghum	plasma membrane	31.42	7.83
TraesCS2A01G461800.1	Wheat	plasma membrane	29.39	7.37
TraesCS2B01G483400.1	Wheat	plasma membrane	30.07	7.35
Solyc05g007230.2.1	Tomato	nucleus, plasma membrane	30.41	7.2
Os04t0618700-01	Rice	plasma membrane	28.72	7.19
TraesCS2D01G462000.1	Wheat	plasma membrane	29.39	7.18
CDY03225	Canola	plasma membrane	24.32	6.79
GSMUA_Achr6P19930_001	Banana	plasma membrane	18.58	6.57
CDX87723	Canola	plasma membrane	18.92	5.85
Bra017563.1-P	Field mustard	plasma membrane	23.65	5.67
CDY35158	Canola	plasma membrane	13.85	4.75
CDY43966	Canola	cytosol	2.03	1.78

Protein Annotations

EnsemblPlants:Solyc02g072390.1.1	EnsemblPlantsGene:Solyc02g072390.1	Gene3D:3.80.10.10	InterPro:IPR032675	InterPro:LRR_dom_sf	PANTHER:PTHR43887
PANTHER:PTHR43887:SF21	SUPFAM:SSF52058	UniParc:UPI00027675AA	UniProt:K4B8L3	MapMan:35.1	:

Description

No Description!

Coordinates

chr2:-:41612438..41613905

Molecular Weight (calculated)

32944.8 Da

IEP (calculated)

7.042

GRAVY (calculated)

-0.033

Length

296 amino acids

Sequence
(BLAST)

001: MGFSGTIPPQ LGNLSFLVSL DLSKNNFRTR ELPSEFSHLR RLRVINLSYT NFRRNSIGIA TLPSLIRFSM GYNKLLNGSN VLSKFSISTL EYLDLRNSGL
101: TGDFPSDLCH RLPRLRNLAL GNNMLSGEVP RNISECQSTI SDEIGHLYNL KNIFMDKNYL TGSIPLTLFN ISSLEMLYMN DNKLEGPLLR QVGNLTMLTW
201: FDLSNNYLAG IIPHEVGNLQ ELKDLPLSYN EFSGSIPIGI FNISSLVTIG LTENHISGNL PSTIGNGLPD VEKIFLGGNN INGVFYLDLS TCQMRA

Best Arabidopsis Sequence Match ( AT1G08590.1 )
(BLAST)

0001: MAIPRLFFLF YYIGFALFPF VSSETFQNSE QEILLAFKSD LFDPSNNLQD WKRPENATTF SELVHCHWTG VHCDANGYVA KLLLSNMNLS GNVSDQIQSF
0101: PSLQALDLSN NAFESSLPKS LSNLTSLKVI DVSVNSFFGT FPYGLGMATG LTHVNASSNN FSGFLPEDLG NATTLEVLDF RGGYFEGSVP SSFKNLKNLK
0201: FLGLSGNNFG GKVPKVIGEL SSLETIILGY NGFMGEIPEE FGKLTRLQYL DLAVGNLTGQ IPSSLGQLKQ LTTVYLYQNR LTGKLPRELG GMTSLVFLDL
0301: SDNQITGEIP MEVGELKNLQ LLNLMRNQLT GIIPSKIAEL PNLEVLELWQ NSLMGSLPVH LGKNSPLKWL DVSSNKLSGD IPSGLCYSRN LTKLILFNNS
0401: FSGQIPEEIF SCPTLVRVRI QKNHISGSIP AGSGDLPMLQ HLELAKNNLT GKIPDDIALS TSLSFIDISF NHLSSLSSSI FSSPNLQTFI ASHNNFAGKI
0501: PNQIQDRPSL SVLDLSFNHF SGGIPERIAS FEKLVSLNLK SNQLVGEIPK ALAGMHMLAV LDLSNNSLTG NIPADLGASP TLEMLNVSFN KLDGPIPSNM
0601: LFAAIDPKDL VGNNGLCGGV LPPCSKSLAL SAKGRNPGRI HVNHAVFGFI VGTSVIVAMG MMFLAGRWIY TRWDLYSNFA REYIFCKKPR EEWPWRLVAF
0701: QRLCFTAGDI LSHIKESNII GMGAIGIVYK AEVMRRPLLT VAVKKLWRSP SPQNDIEDHH QEEDEEDDIL REVNLLGGLR HRNIVKILGY VHNEREVMMV
0801: YEYMPNGNLG TALHSKDEKF LLRDWLSRYN VAVGVVQGLN YLHNDCYPPI IHRDIKSNNI LLDSNLEARI ADFGLAKMML HKNETVSMVA GSYGYIAPEY
0901: GYTLKIDEKS DIYSLGVVLL ELVTGKMPID PSFEDSIDVV EWIRRKVKKN ESLEEVIDAS IAGDCKHVIE EMLLALRIAL LCTAKLPKDR PSIRDVITML
1001: AEAKPRRKSV CQVAGDLPIF RNSPVVGLI

Arabidopsis Description

PXL1Leucine-rich repeat receptor-like protein kinase PXL1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FRS6]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.