Factsheet for TraesCS2B01G483500.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, extracellular

Predictor Summary:

extracellular 5
endoplasmic reticulum 4
vacuole 4
plasma membrane 5
golgi 4
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, plasma membrane
Any Predictor:	plastid, secretory
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G293000.1
TraesCS4B01G020300.1
TraesCS4D01G018500.1
TraesCS5A01G015000.1
TraesCS5B01G013200.1
TraesCS5D01G020900.1
TraesCS6A01G216500.1
TraesCS6B01G246400.1
TraesCS6D01G199100.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G46330.1	TraesCS4A01G293000.1	AT2G21660.1	23395902
AT5G46330.1	TraesCS4B01G020300.1	AT2G21660.1	23395902
AT5G46330.1	TraesCS4D01G018500.1	AT2G21660.1	23395902
AT5G46330.1	TraesCS5A01G015000.1	AT2G21660.1	23395902
AT5G46330.1	TraesCS5B01G013200.1	AT2G21660.1	23395902
AT5G46330.1	TraesCS5D01G020900.1	AT2G21660.1	23395902
AT5G46330.1	TraesCS6A01G216500.1	AT2G21660.1	23395902
AT5G46330.1	TraesCS6B01G246400.1	AT2G21660.1	23395902
AT5G46330.1	TraesCS6D01G199100.1	AT2G21660.1	23395902

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G462100.1	Wheat	extracellular, plasma membrane	92.31	92.31
TraesCS2A01G461900.1	Wheat	extracellular, plasma membrane, vacuole	91.89	91.89
TraesCS2B01G483400.1	Wheat	plasma membrane	86.07	34.19
HORVU2Hr1G104030.4	Barley	mitochondrion, plasma membrane	74.01	31.99
EES12871	Sorghum	plasma membrane	67.15	27.19
Zm00001d002287_P001	Maize	plasma membrane	65.9	26.64
Solyc02g072390.1.1	Tomato	plastid	16.22	26.35
Os04t0618700-01	Rice	plasma membrane	64.24	26.12
VIT_10s0003g02930.t01	Wine grape	plastid	27.86	25.57
Solyc02g070910.1.1	Tomato	nucleus, plasma membrane	49.48	24.84
PGSC0003DMT400021384	Potato	plasma membrane	49.27	20.27
Solyc02g070890.2.1	Tomato	plasma membrane	49.06	20.19
KRH42321	Soybean	plasma membrane	47.82	19.74
Bra022032.1-P	Field mustard	plasma membrane	45.32	19.69
KRH58443	Soybean	plasma membrane	46.78	19.35
AT5G46330.1	Thale cress	plasma membrane	45.95	18.84
GSMUA_Achr6P19930_001	Banana	plasma membrane	32.43	18.64
TraesCS1B01G134600.1	Wheat	plasma membrane	37.21	18.51
CDY03225	Canola	plasma membrane	35.34	16.02
CDX87723	Canola	plasma membrane	28.69	14.42
Bra017563.1-P	Field mustard	plasma membrane	34.51	13.44
CDY35158	Canola	plasma membrane	23.49	13.08
TraesCS2B01G415500.1	Wheat	plasma membrane	31.6	13.0
CDY43966	Canola	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:TraesCS2B01G483500.1	EnsemblPlantsGene:TraesCS2B01G483500	Gene3D:3.80.10.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR001611	InterPro:IPR032675	InterPro:LRR_N_plant-typ	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	InterPro:Leu-rich_rpt_typical-subtyp
PANTHER:PTHR45297	PFAM:PF00560	PFAM:PF08263	PRINTS:PR00019	SEG:seg	SignalP:SignalP-noTM
SMART:SM00369	SUPFAM:SSF52047	SUPFAM:SSF52058	TMHMM:TMhelix	MapMan:35.1	:

Description

No Description!

Coordinates

chr2B:-:680753333..680754916

Molecular Weight (calculated)

50693.6 Da

IEP (calculated)

6.154

GRAVY (calculated)

0.242

Length

481 amino acids

Sequence
(BLAST)

001: MVARHTWLLP PVLAVCLAAA LLAADASAPL HLEALLAFKK GVTADPLGAL SNWTAGAGDA VRGGVPRHCN WTGVACDGAG RVTSIQLLQT QLQGALTPFL
101: GNISTLQLLD LTENGFTGAI PPQLGRLGEL QQLILTENSF AGGIPRELGD LGNLQLLDLT TNTLTGVIPS SLCNCSAMWA LGLGINNLTG QLPACIGDLD
201: KLQIFSAFIN NLDGELPPSF AKLTQMKSLD LSTNKLSGSI PPEIGNFSHL WILQLLENRF SGPIPSALGR CKNLTLLNIY SNRFTGAIPR ELGELVNLEA
301: LRLYDNALSS EIPSSLGRCT KLLSLGLSMN QLTGSIPPEL GELRSLQTLT LHDNRLTGTV PLSLTNLVNL TYLSLSNNSL SGPLPENIGA LRNLGKLIIH
401: SNSLSGPIPA SITNCTLLSN ASMSSNELTG HLPAGLGQLQ GLVFFSVGNN SLNGSIPKDL LDCVNLRTLV LASNNFTGGL W

Best Arabidopsis Sequence Match ( AT1G73066.1 )
(BLAST)

001: MENLGLFQIL LLFCLFVSVR IVSVSCLNSD GLTLLSLRKH LDKVPPELTS TWKTNASEAT PCNWFGIICD DSKKVTSLNF TGSGVSGQLG PEIGQLKSLE
101: ILDMSSNNFS GIIPSSLGNC SSLVYIDLSE NSFSGKVPDT LGSLKSLADL YLYSNSLTGE LPKSLFRIPV LNYLHVEHNN LTGLIPQNVG EAKELLHLRL
201: FDNQFTGTIP ESIGNCSKLE ILYLHKNKLV GSLPASLNLL ESLTDLFVAN NSLRGTVQFG STKCRNLVTL DLSYNEFEGG VPPELGNCSS LDALVIVSGN
301: LSGTIPSSLG MLKNLTILNL SENRLSGSIP AELGNCSSLN LLKLNDNQLV GGIPSALGKL RKLESLELFE NRFSGEIPIE IWKIQSLTQL LVYRNNLTGK
401: LPEEITKLKN LKIVTLFNNS FYGVIPPNLG LNSNLEIIDF IGNNFTGEIP RNLCHGKMLT VFNLGSNRLH GKIPASVSQC KTLSRFILRE NNLSGFLPKF
501: SKNQDLSFLD LNSNSFEGPI PRSLGSCRNL TTINLSRNKL TRNIPRELEN LQNLSHLNLG SNLLNGTVPS KFSNWKELTT LVLSGNRFSG FVPPDRHS

Arabidopsis Description

Highly similar to receptor-like protein kinase [Source:UniProtKB/TrEMBL;Acc:Q9SSM0]
SUBAcon: [plasma membrane,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.