Factsheet for VIT_10s0003g02930.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
nucleus 1
cytosol 1
plasma membrane 1
extracellular 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_03s0063g02610.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G46330.1	VIT_03s0063g02610.t01	AT2G21660.1	23395902

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY43966	Canola	cytosol	19.85	30.86
TraesCS2D01G462100.1	Wheat	extracellular, plasma membrane	25.95	28.27
TraesCS2A01G461900.1	Wheat	extracellular, plasma membrane, vacuole	25.95	28.27
Solyc02g070910.1.1	Tomato	nucleus, plasma membrane	51.15	27.97
TraesCS2B01G483500.1	Wheat	extracellular, plasma membrane	25.57	27.86
Solyc02g070890.2.1	Tomato	plasma membrane	59.92	26.86
PGSC0003DMT400021384	Potato	plasma membrane	59.92	26.86
KRH58443	Soybean	plasma membrane	59.16	26.66
KRH42321	Soybean	plasma membrane	58.78	26.44
CDY03225	Canola	plasma membrane	48.85	24.13
AT5G46330.1	Thale cress	plasma membrane	54.01	24.13
HORVU2Hr1G104030.4	Barley	mitochondrion, plasma membrane	51.15	24.08
Bra022032.1-P	Field mustard	plasma membrane	50.0	23.67
VIT_10s0003g02910.t01	Wine grape	cytosol, peroxisome, plasma membrane	19.66	23.41
CDY35158	Canola	plasma membrane	37.98	23.03
CDX87723	Canola	plasma membrane	41.98	22.99
TraesCS2B01G483400.1	Wheat	plasma membrane	52.67	22.79
TraesCS2A01G461800.1	Wheat	plasma membrane	51.15	22.69
GSMUA_Achr6P19930_001	Banana	plasma membrane	35.5	22.22
Os04t0618700-01	Rice	plasma membrane	49.43	21.89
EES12871	Sorghum	plasma membrane	49.43	21.8
TraesCS2D01G462000.1	Wheat	plasma membrane	50.19	21.72
Zm00001d002287_P001	Maize	plasma membrane	48.66	21.43
Bra017563.1-P	Field mustard	plasma membrane	48.47	20.57
VIT_01s0010g03070.t01	Wine grape	endoplasmic reticulum, plasma membrane	17.75	19.58
VIT_08s0040g01550.t01	Wine grape	cytosol	19.85	18.84
VIT_17s0000g08760.t01	Wine grape	plasma membrane	32.82	17.82
VIT_04s0023g03070.t01	Wine grape	plasma membrane	33.4	15.49
VIT_18s0001g13590.t01	Wine grape	plasma membrane	31.87	15.28

Protein Annotations

Gene3D:1.10.510.10	Gene3D:3.80.10.10	MapMan:35.1	ProteinID:CCB55768	ProteinID:CCB55768.1	ncoils:Coil
UniProt:F6HMH9	EMBL:FN595992	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004672
GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0005575	GO:GO:0006464	GO:GO:0006468
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016301
GO:GO:0016740	GO:GO:0019538	InterPro:IPR000719	InterPro:IPR001611	InterPro:IPR032675	InterPro:Kinase-like_dom_sf
InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	InterPro:Leu-rich_rpt_typical-subtyp	PFAM:PF00560	PFAM:PF13855	PRINTS:PR00019
PFscan:PS50011	PFscan:PS51450	PANTHER:PTHR27000	PANTHER:PTHR27000:SF426	InterPro:Prot_kinase_dom	SMART:SM00369
SUPFAM:SSF52047	SUPFAM:SSF52058	SUPFAM:SSF56112	UniParc:UPI0002108E12	ArrayExpress:VIT_10s0003g02930	EnsemblPlantsGene:VIT_10s0003g02930
EnsemblPlants:VIT_10s0003g02930.t01	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr10:-:5035822..5046421

Molecular Weight (calculated)

56469.1 Da

IEP (calculated)

6.943

GRAVY (calculated)

0.021

Length

524 amino acids

Sequence
(BLAST)

001: MGSKIFIPGP YLRSSKAINN RENVVSPSQK KYCEQNGYPL SFLPNLGANF LEGSIPERIC NCTGLLNLGI DNNNLSGAIP SDIGRLDNLQ VFTGYRNNLV
101: GSIPVSIGTL GALQVLDLST NHLSGVLPPE IGNLSNLETL QLLENQLHGK IPPELGLCRK LTTLNLYGNQ LSSTIPSSLF QLKSLIHLGI SENELSGTIP
201: FEVGSLRSLQ ALTLQLNKFT GQIPSSITNL TNLTYLSMDF NFFTGDIPSN IGSLYRLKNL TLNNNLLQGS IPSSISNCTR LLSDLGLGNN RFAGPIPHAI
301: SKLESLLYLT LHGNLFNGSI PTSMGHLSRL ATLDLSHNHL VGSIPGPLGK LEMVQIVDMS NNNLSGSIPA TLQRCKNLFN IDLSVNQLSG TIPEKAFAGM
401: DVLTSLNLSR NNLGGRLPGS LAIMKNLSSL DLSQNKFKGM IPESYANIST LRHLNLSFNQ LEGHPSNILL DGDWEAHVSD FGTARILGVH LQDGSSVCSS
501: SAFEGTIGYL APVISGYNMI TYIE

Best Arabidopsis Sequence Match ( AT1G17750.1 )
(BLAST)

0001: MRNLGLLEIT LLCSLFVYFR IDSVSSLNSD GLALLSLLKH FDKVPLEVAS TWKENTSETT PCNNNWFGVI CDLSGNVVET LNLSASGLSG QLGSEIGELK
0101: SLVTLDLSLN SFSGLLPSTL GNCTSLEYLD LSNNDFSGEV PDIFGSLQNL TFLYLDRNNL SGLIPASVGG LIELVDLRMS YNNLSGTIPE LLGNCSKLEY
0201: LALNNNKLNG SLPASLYLLE NLGELFVSNN SLGGRLHFGS SNCKKLVSLD LSFNDFQGGV PPEIGNCSSL HSLVMVKCNL TGTIPSSMGM LRKVSVIDLS
0301: DNRLSGNIPQ ELGNCSSLET LKLNDNQLQG EIPPALSKLK KLQSLELFFN KLSGEIPIGI WKIQSLTQML VYNNTLTGEL PVEVTQLKHL KKLTLFNNGF
0401: YGDIPMSLGL NRSLEEVDLL GNRFTGEIPP HLCHGQKLRL FILGSNQLHG KIPASIRQCK TLERVRLEDN KLSGVLPEFP ESLSLSYVNL GSNSFEGSIP
0501: RSLGSCKNLL TIDLSQNKLT GLIPPELGNL QSLGLLNLSH NYLEGPLPSQ LSGCARLLYF DVGSNSLNGS IPSSFRSWKS LSTLVLSDNN FLGAIPQFLA
0601: ELDRLSDLRI ARNAFGGKIP SSVGLLKSLR YGLDLSANVF TGEIPTTLGA LINLERLNIS NNKLTGPLSV LQSLKSLNQV DVSYNQFTGP IPVNLLSNSS
0701: KFSGNPDLCI QASYSVSAII RKEFKSCKGQ VKLSTWKIAL IAAGSSLSVL ALLFALFLVL CRCKRGTKTE DANILAEEGL SLLLNKVLAA TDNLDDKYII
0801: GRGAHGVVYR ASLGSGEEYA VKKLIFAEHI RANQNMKREI ETIGLVRHRN LIRLERFWMR KEDGLMLYQY MPNGSLHDVL HRGNQGEAVL DWSARFNIAL
0901: GISHGLAYLH HDCHPPIIHR DIKPENILMD SDMEPHIGDF GLARILDDST VSTATVTGTT GYIAPENAYK TVRSKESDVY SYGVVLLELV TGKRALDRSF
1001: PEDINIVSWV RSVLSSYEDE DDTAGPIVDP KLVDELLDTK LREQAIQVTD LALRCTDKRP ENRPSMRDVV KDLTDLESFV RSTSGSVH

Arabidopsis Description

PEPR2Leucine-rich repeat receptor-like protein kinase PEPR2 [Source:UniProtKB/Swiss-Prot;Acc:Q9FZ59]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.