CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
mitochondrion 2
cytosol 2
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plasma membrane, plastid
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY15876
CDY59763
CDY70933
CDY72366

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G46330.1	CDY15876	AT2G21660.1	23395902
AT5G46330.1	CDY59763	AT2G21660.1	23395902
AT5G46330.1	CDY70933	AT2G21660.1	23395902
AT5G46330.1	CDY72366	AT2G21660.1	23395902

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX87723	Canola	plasma membrane	95.25	33.54
Bra022032.1-P	Field mustard	plasma membrane	99.41	30.26
CDY03225	Canola	plasma membrane	83.38	26.48
CDY35158	Canola	plasma membrane	62.02	24.19
AT5G46330.1	Thale cress	plasma membrane	79.23	22.76
VIT_10s0003g02930.t01	Wine grape	plastid	30.86	19.85
KRH58443	Soybean	plasma membrane	51.04	14.79
KRH42321	Soybean	plasma membrane	49.55	14.33
PGSC0003DMT400021384	Potato	plasma membrane	49.26	14.2
HORVU2Hr1G104030.4	Barley	mitochondrion, plasma membrane	42.73	12.94
TraesCS2A01G461800.1	Wheat	plasma membrane	43.03	12.28
Os04t0618700-01	Rice	plasma membrane	42.73	12.17
TraesCS2D01G462000.1	Wheat	plasma membrane	43.62	12.14
TraesCS2B01G483400.1	Wheat	plasma membrane	43.32	12.06
EES12871	Sorghum	plasma membrane	42.43	12.04
Zm00001d002287_P001	Maize	plasma membrane	42.43	12.02
GSMUA_Achr6P19930_001	Banana	plasma membrane	27.6	11.11
CDY50061	Canola	plasma membrane	25.52	9.51
CDX78976	Canola	plasma membrane	24.63	8.81
CDX75559	Canola	plasma membrane	27.0	8.43
CDX73184	Canola	plasma membrane	26.71	8.26
CDY47508	Canola	plasma membrane	26.71	8.26
CDX69210	Canola	plasma membrane	26.11	8.18
CDX96448	Canola	extracellular	14.54	8.11
CDY59934	Canola	extracellular	14.24	8.03
CDY39388	Canola	plasma membrane	21.36	7.71
CDY49822	Canola	plasma membrane	22.85	7.62
Solyc02g072390.1.1	Tomato	plastid	1.78	2.03
TraesCS2A01G461900.1	Wheat	extracellular, plasma membrane, vacuole	0.0	0.0
TraesCS2B01G483500.1	Wheat	extracellular, plasma membrane	0.0	0.0
TraesCS2D01G462100.1	Wheat	extracellular, plasma membrane	0.0	0.0

Protein Annotations

Gene3D:3.80.10.10	MapMan:35.1	GO:A0A078I2D0	UniProt:A0A078I2D0	EnsemblPlants:CDY43966	ProteinID:CDY43966
ProteinID:CDY43966.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	EnsemblPlantsGene:GSBRNA2T00079352001	InterPro:IPR001611	InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt
PFAM:PF13855	PRINTS:PR00019	PFscan:PS51450	PANTHER:PTHR43887	PANTHER:PTHR43887:SF21	SUPFAM:SSF52058
TMHMM:TMhelix	UniParc:UPI0004EDD79A	SEG:seg	:	:	:

Description

BnaA02g24440DBnaA02g24440D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I2D0]

Coordinates

chrLK032575:+:92479..93492

Molecular Weight (calculated)

37111.4 Da

IEP (calculated)

9.733

GRAVY (calculated)

-0.123

Length

337 amino acids

Sequence
(BLAST)

001: MFGMKQLSVL ELSNNKLAGP IPIWLGKLES LTYLGLHGNQ FNGSIHVSLK SLSHLNTFDI SDNLLTGTIP GELISSMRNL QLNLNFSNNL LRGTIPDELG
101: KLEMVQEIDF SNNLFSGSIP RSLQACKNVF LLDFSRNNLT GQIPDQVFEQ GGMDMIKRLN LSRNSLSGEI PKRFGNNLTQ LVSLDLSNNN LTGEIPESLA
201: NLPILKHLKL ASNHLKGHVP ESGVFKDINA SDLMGNTDLC GRKKPLKPCM MMIKKKSNHF SKRSAIIMIV LGSAAVLLLL LLLVARCKKK TETSSESPMP
301: DLDSALKLKR FDPKELEQAT DSFNNANIIG SSRLSTV

Best Arabidopsis Sequence Match ( AT5G46330.1 )
(BLAST)

0001: MKLLSKTFLI LTLTFFFFGI ALAKQSFEPE IEALKSFKNG ISNDPLGVLS DWTIIGSLRH CNWTGITCDS TGHVVSVSLL EKQLEGVLSP AIANLTYLQV
0101: LDLTSNSFTG KIPAEIGKLT ELNQLILYLN YFSGSIPSGI WELKNIFYLD LRNNLLSGDV PEEICKTSSL VLIGFDYNNL TGKIPECLGD LVHLQMFVAA
0201: GNHLTGSIPV SIGTLANLTD LDLSGNQLTG KIPRDFGNLL NLQSLVLTEN LLEGDIPAEI GNCSSLVQLE LYDNQLTGKI PAELGNLVQL QALRIYKNKL
0301: TSSIPSSLFR LTQLTHLGLS ENHLVGPISE EIGFLESLEV LTLHSNNFTG EFPQSITNLR NLTVLTVGFN NISGELPADL GLLTNLRNLS AHDNLLTGPI
0401: PSSISNCTGL KLLDLSHNQM TGEIPRGFGR MNLTFISIGR NHFTGEIPDD IFNCSNLETL SVADNNLTGT LKPLIGKLQK LRILQVSYNS LTGPIPREIG
0501: NLKDLNILYL HSNGFTGRIP REMSNLTLLQ GLRMYSNDLE GPIPEEMFDM KLLSVLDLSN NKFSGQIPAL FSKLESLTYL SLQGNKFNGS IPASLKSLSL
0601: LNTFDISDNL LTGTIPGELL ASLKNMQLYL NFSNNLLTGT IPKELGKLEM VQEIDLSNNL FSGSIPRSLQ ACKNVFTLDF SQNNLSGHIP DEVFQGMDMI
0701: ISLNLSRNSF SGEIPQSFGN MTHLVSLDLS SNNLTGEIPE SLANLSTLKH LKLASNNLKG HVPESGVFKN INASDLMGNT DLCGSKKPLK PCTIKQKSSH
0801: FSKRTRVILI ILGSAAALLL VLLLVLILTC CKKKEKKIEN SSESSLPDLD SALKLKRFEP KELEQATDSF NSANIIGSSS LSTVYKGQLE DGTVIAVKVL
0901: NLKEFSAESD KWFYTEAKTL SQLKHRNLVK ILGFAWESGK TKALVLPFME NGNLEDTIHG SAAPIGSLLE KIDLCVHIAS GIDYLHSGYG FPIVHCDLKP
1001: ANILLDSDRV AHVSDFGTAR ILGFREDGST TASTSAFEGT IGYLAPEFAY MRKVTTKADV FSFGIIMMEL MTKQRPTSLN DEDSQDMTLR QLVEKSIGNG
1101: RKGMVRVLDM ELGDSIVSLK QEEAIEDFLK LCLFCTSSRP EDRPDMNEIL THLMKLRGKA NSFREDRNED REV

Arabidopsis Description

FLS2Leucine-rich repeat receptor-like protein kinase (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0LGU8]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.